Rizal Hariadi

Asst Professor

  • 929 Citations
  • 11 h-Index
19992019

Research output per year

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Research Output

  • 929 Citations
  • 11 h-Index
  • 22 Article
  • 3 Conference contribution
  • 1 Comment/debate
  • 1 Conference article
2019

A Bayesian Nonparametric Approach to Single Molecule Förster Resonance Energy Transfer

Sgouralis, I., Madaan, S., Djutanta, F., Kha, R., Hariadi, R. & Presse, S., Jan 24 2019, In : Journal of Physical Chemistry B. 123, 3, p. 675-688 14 p.

Research output: Contribution to journalArticle

6 Scopus citations

Autonomous dynamic control of DNA nanostructure self-assembly

Green, L. N., Subramanian, H. K. K., Mardanlou, V., Kim, J., Hariadi, R. & Franco, E., Jun 1 2019, In : Nature Chemistry. 11, 6, p. 510-520 11 p.

Research output: Contribution to journalArticle

23 Scopus citations
2017

A coarse-grained model captures the temporal evolution of DNA nanotube length distributions

Mardanlou, V., Yaghoubi, K. C., Green, L. N., Subramanian, H. K. K., Hariadi, R., Kim, J. & Franco, E., Dec 7 2017, (Accepted/In press) In : Natural Computing. p. 1-17 17 p.

Research output: Contribution to journalArticle

4 Scopus citations
2016

A coarse-grained model of DNA nanotube population growth

Mardanlou, V., Green, L. N., Subramanian, H. K. K., Hariadi, R., Kim, J. & Franco, E., 2016, DNA Computing and Molecular Programming - 22nd International Conference, DNA 2016, Proceedings. Springer Verlag, Vol. 9818. p. 135-147 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9818).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Engineering Circular Gliding of Actin Filaments Along Myosin-Patterned DNA Nanotube Rings to Study Long-Term Actin-Myosin Behaviors

Hariadi, R., Appukutty, A. J. & Sivaramakrishnan, S., Sep 27 2016, In : ACS Nano. 10, 9, p. 8281-8288 8 p.

Research output: Contribution to journalArticle

12 Scopus citations

Patterning protein complexes on DNA nanostructures using a GFP nanobody

Sommese, R. F., Hariadi, R., Kim, K., Liu, M., Tyska, M. J. & Sivaramakrishnan, S., Nov 1 2016, In : Protein Science. 25, 11, p. 2089-2094 6 p.

Research output: Contribution to journalArticle

2 Scopus citations
2015

Bottom up construction of dynamic biomolecular materials

Green, L., Stewart, J., Subramanian, H., Mardanlou, V., Kim, J., Hariadi, R. & Franco, E., Jan 1 2015, Synthetic Biology: Engineering, Evolution, and Design Conference 2015, SEED 2015. AIChE, p. 477-491 15 p. (Synthetic Biology: Engineering, Evolution, and Design Conference 2015, SEED 2015; vol. 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Cellular chirality arising from the self-organization of the actin cytoskeleton

Tee, Y. H., Shemesh, T., Thiagarajan, V., Hariadi, R. F., Anderson, K. L., Page, C., Volkmann, N., Hanein, D., Sivaramakrishnan, S., Kozlov, M. M. & Bershadsky, A. D., Apr 30 2015, In : Nature Cell Biology. 17, 4, p. 445-457 13 p.

Research output: Contribution to journalArticle

158 Scopus citations

Determining hydrodynamic forces in bursting bubbles using DNA nanotube mechanics

Hariadi, R. F., Winfree, E. & Yurke, B., Nov 10 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 45, p. E6086-E6095

Research output: Contribution to journalArticle

9 Scopus citations

Mechanical coordination in motor ensembles revealed using engineered artificial myosin filaments

Hariadi, R., Sommese, R. F., Adhikari, A. S., Taylor, R. E., Sutton, S., Spudich, J. A. & Sivaramakrishnan, S., Aug 6 2015, In : Nature Nanotechnology. 10, 8, p. 696-700 5 p.

Research output: Contribution to journalArticle

30 Scopus citations

Thermodynamics and kinetics of DNA nanotube polymerization from single-filament measurements

Hariadi, R. F., Yurke, B. & Winfree, E., Apr 1 2015, In : Chemical Science. 6, 4, p. 2252-2267 16 p.

Research output: Contribution to journalArticle

24 Scopus citations

Tuning myosin-driven sorting on cellular actin networks

Hariadi, R. F., Sommese, R. & Sivaramakrishnan, S., Mar 4 2015, In : eLife. 2015, 4, e05472.

Research output: Contribution to journalArticle

12 Scopus citations

Using protein dimers to maximize the protein hybridization efficiency with multisite DNA origami scaffolds

Verma, V., Mallik, L., Hariadi, R. F., Sivaramakrishnan, S., Skiniotis, G. & Joglekar, A. P., Sep 8 2015, In : PloS one. 10, 9, e0137125.

Research output: Contribution to journalArticle

3 Scopus citations
2014

Myosin lever arm directs collective motion on cellular actin network

Hariadi, R. F., Cale, M. & Sivaramakrishnan, S., Mar 18 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 11, p. 4091-4096 6 p.

Research output: Contribution to journalArticle

30 Scopus citations
2013

Integrating DNA strand-displacement circuitry with DNA tile self-assembly

Zhang, D. Y., Hariadi, R. F., Choi, H. M. T. & Winfree, E., 2013, In : Nature communications. 4, 1965.

Research output: Contribution to journalArticle

107 Scopus citations
2012

Direct atomic force microscopy observation of DNA tile crystal growth at the single-molecule level

Evans, C. G., Hariadi, R. F. & Winfree, E., Jun 27 2012, In : Journal of the American Chemical Society. 134, 25, p. 10485-10492 8 p.

Research output: Contribution to journalArticle

19 Scopus citations
2010
11 Scopus citations
2008

Erratum: Toward reliable algorithmic self-assembly of DNA tiles: A fixed-width cellular automaton pattern (Nano Letters (2008) 8: 10 (1791))

Fujibayashi, K., Hariadi, R., Sung, H. P., Winfree, E. & Murata, S., Oct 1 2008, In : Nano Letters. 8, 10, 1 p.

Research output: Contribution to journalComment/debate

5 Scopus citations

Programming DNA tube circumferences

Yin, P., Hariadi, R. F., Sahu, S., Choi, H. M. T., Sung, H. P., LaBean, T. H. & Reif, J. H., Aug 8 2008, In : Science. 321, 5890, p. 824-826 3 p.

Research output: Contribution to journalArticle

297 Scopus citations

Toward reliable algorithmic self-assembly of DNA tiles: A fixed-width cellular automaton pattern

Fujibayashi, K., Hariadi, R., Park, S. H., Winfree, E. & Murata, S., Jul 1 2008, In : Nano Letters. 8, 7, p. 1791-1797 7 p.

Research output: Contribution to journalArticle

148 Scopus citations
2007

Abstract: Single strand DNA tiles and molecular tubes with precisely programmable circumferences

Yin, P., Hariadi, R., Sahu, S., Choi, H. M. T., Park, S. H., Walters, B., LaBean, T. H. & Reif, J. H., 2007, 4th Conference on Foundations of Nanoscience: Self-Assembled Architectures and Devices, FNANO 2007. p. 71-78 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations
2002

Controlling nanometer-scale crystal growth on a model biomaterial with a scanning force microscope

Hariadi, R., Langford, S. C. & Dickinson, J. T., Oct 15 2002, In : Langmuir. 18, 21, p. 7773-7776 4 p.

Research output: Contribution to journalArticle

10 Scopus citations
2000

Mechanical detachment of nanometer particles strongly adhering to a substrate: An application of corrosive tribology

Dickinson, J. T., Hariadi, R. F. & Langford, S. C., Jan 1 2000, In : Journal of Adhesion. 74, 1-4, p. 373-390 18 p.

Research output: Contribution to journalArticle

2 Scopus citations

Scanning force microscope study of detachment of nanometer adhering particulates

Dickinson, J. T., Hariadi, R. F., Scudiero, L. & Langford, S. C., Jan 1 2000, In : Materials Science and Engineering A. 288, 2, p. 182-186 5 p.

Research output: Contribution to journalConference article

1999

A scanning force microscope study of detachment of nanometer-sized particles from glass surfaces

Dickinson, J. T., Hariadi, R. F., Scudiero, L. & Langford, S. C., Jan 1 1999, In : Tribology Letters. 7, 2-3, p. 113-119 7 p.

Research output: Contribution to journalArticle

8 Scopus citations

Scanning force microscope observations of particle detachment from substrates: The role of water vapor in tribological debonding

Hariadi, R. F., Langford, S. C. & Dickinson, J. T., Nov 1 1999, In : Journal of Applied Physics. 86, 9, p. 4885-4891 7 p.

Research output: Contribution to journalArticle

6 Scopus citations

Scanning force microscope studies of detachment of nanometer adhering particulates

Dickinson, J. T., Hariadi, R. F., Scudiero, L. & Langford, S. C., Jan 1 1999, In : Materials Research Society Symposium - Proceedings. 566, p. 273-278 6 p.

Research output: Contribution to journalArticle