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Research Output 1999 2019

  • 736 Citations
  • 10 h-Index
  • 23 Article
  • 3 Conference contribution
  • 1 Comment/debate
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Article
2019
1 Citation (Scopus)

A Bayesian Nonparametric Approach to Single Molecule Förster Resonance Energy Transfer

Sgouralis, I., Madaan, S., Djutanta, F., Kha, R., Hariadi, R. & Presse, S., Jan 24 2019, In : Journal of Physical Chemistry B. 123, 3, p. 675-688 14 p.

Research output: Contribution to journalArticle

Bayes Theorem
Energy Transfer
Photons
Energy transfer
energy transfer

Autonomous dynamic control of DNA nanostructure self-assembly

Green, L. N., Subramanian, H. K. K., Mardanlou, V., Kim, J., Hariadi, R. & Franco, E., Jan 1 2019, In : Nature Chemistry.

Research output: Contribution to journalArticle

Self assembly
Nanostructures
DNA
Nucleic acids
Nanotechnology
2017
1 Citation (Scopus)

A coarse-grained model captures the temporal evolution of DNA nanotube length distributions

Mardanlou, V., Yaghoubi, K. C., Green, L. N., Subramanian, H. K. K., Hariadi, R., Kim, J. & Franco, E., Dec 7 2017, (Accepted/In press) In : Natural Computing. p. 1-17 17 p.

Research output: Contribution to journalArticle

Nanotubes
DNA
Bins
Tile
Ordinary differential equations
2016
7 Citations (Scopus)

Engineering Circular Gliding of Actin Filaments Along Myosin-Patterned DNA Nanotube Rings to Study Long-Term Actin-Myosin Behaviors

Hariadi, R., Appukutty, A. J. & Sivaramakrishnan, S., Sep 27 2016, In : ACS Nano. 10, 9, p. 8281-8288 8 p.

Research output: Contribution to journalArticle

myosins
gliding
Myosins
Nanotubes
Actins
1 Citation (Scopus)

Patterning protein complexes on DNA nanostructures using a GFP nanobody

Sommese, R. F., Hariadi, R., Kim, K., Liu, M., Tyska, M. J. & Sivaramakrishnan, S., Nov 1 2016, In : Protein Science. 25, 11, p. 2089-2094 6 p.

Research output: Contribution to journalArticle

Single-Domain Antibodies
Nanostructures
DNA
Proteins
Actin-Related Protein 2-3 Complex
2015
111 Citations (Scopus)

Cellular chirality arising from the self-organization of the actin cytoskeleton

Tee, Y. H., Shemesh, T., Thiagarajan, V., Hariadi, R., Anderson, K. L., Page, C., Volkmann, N., Hanein, D., Sivaramakrishnan, S., Kozlov, M. M. & Bershadsky, A. D., Apr 30 2015, In : Nature Cell Biology. 17, 4, p. 445-457 13 p.

Research output: Contribution to journalArticle

Nonmuscle Myosin Type IIA
Actinin
Actin Cytoskeleton
Actomyosin
Functional Laterality
8 Citations (Scopus)

Determining hydrodynamic forces in bursting bubbles using DNA nanotube mechanics

Hariadi, R., Winfree, E. & Yurke, B., Nov 10 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 45, p. E6086-E6095

Research output: Contribution to journalArticle

Nanotubes
Hydrodynamics
Mechanics
Oceans and Seas
DNA
20 Citations (Scopus)

Mechanical coordination in motor ensembles revealed using engineered artificial myosin filaments

Hariadi, R., Sommese, R. F., Adhikari, A. S., Taylor, R. E., Sutton, S., Spudich, J. A. & Sivaramakrishnan, S., Aug 6 2015, In : Nature Nanotechnology. 10, 8, p. 696-700 5 p.

Research output: Contribution to journalArticle

myosins
Myosins
Muscle
filaments
Actins
22 Citations (Scopus)

Thermodynamics and kinetics of DNA nanotube polymerization from single-filament measurements

Hariadi, R., Yurke, B. & Winfree, E., Apr 1 2015, In : Chemical Science. 6, 4, p. 2252-2267 16 p.

Research output: Contribution to journalArticle

Nanotubes
Polymerization
Thermodynamics
Kinetics
DNA
9 Citations (Scopus)

Tuning myosin-driven sorting on cellular actin networks

Hariadi, R., Sommese, R. & Sivaramakrishnan, S., Mar 4 2015, In : eLife. 2015, 4, e05472.

Research output: Contribution to journalArticle

Myosin Type V
Myosins
Sorting
Actins
Tuning
2 Citations (Scopus)

Using protein dimers to maximize the protein hybridization efficiency with multisite DNA origami scaffolds

Verma, V., Mallik, L., Hariadi, R., Sivaramakrishnan, S., Skiniotis, G. & Joglekar, A. P., Sep 8 2015, In : PLoS One. 10, 9, e0137125.

Research output: Contribution to journalArticle

Scaffolds
Dimers
hybridization
DNA
Proteins
2014
26 Citations (Scopus)

Myosin lever arm directs collective motion on cellular actin network

Hariadi, R., Cale, M. & Sivaramakrishnan, S., Mar 18 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 11, p. 4091-4096 6 p.

Research output: Contribution to journalArticle

Myosins
Myosin Type V
Actins
Muscle Contraction
Actin Cytoskeleton
2013
67 Citations (Scopus)

Integrating DNA strand-displacement circuitry with DNA tile self-assembly

Zhang, D. Y., Hariadi, R., Choi, H. M. T. & Winfree, E., 2013, In : Nature Communications. 4, 2965.

Research output: Contribution to journalArticle

tiles
Tile
strands
Self assembly
self assembly
2012
19 Citations (Scopus)

Direct atomic force microscopy observation of DNA tile crystal growth at the single-molecule level

Evans, C. G., Hariadi, R. & Winfree, E., Jun 27 2012, In : Journal of the American Chemical Society. 134, 25, p. 10485-10492 8 p.

Research output: Contribution to journalArticle

Atomic Force Microscopy
Tile
Crystallization
Crystal growth
Atomic force microscopy
2010
11 Citations (Scopus)

Elongational-flow-induced scission of DNA nanotubes in laminar flow

Hariadi, R. & Yurke, B., Oct 19 2010, In : Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 82, 4, 046307.

Research output: Contribution to journalArticle

Laminar Flow
laminar flow
Nanotubes
cleavage
nanotubes
2008
258 Citations (Scopus)

Programming DNA tube circumferences

Yin, P., Hariadi, R., Sahu, S., Choi, H. M. T., Sung, H. P., LaBean, T. H. & Reif, J. H., Aug 8 2008, In : Science. 321, 5890, p. 824-826 3 p.

Research output: Contribution to journalArticle

Nucleotide Motifs
Nanotechnology
Single-Stranded DNA
DNA
139 Citations (Scopus)

Toward reliable algorithmic self-assembly of DNA tiles: A fixed-width cellular automaton pattern

Fujibayashi, K., Hariadi, R., Park, S. H., Winfree, E. & Murata, S., Jul 2008, In : Nano Letters. 8, 7, p. 1791-1797 7 p.

Research output: Contribution to journalArticle

tiles
cellular automata
Cellular automata
Tile
Self assembly
2002
10 Citations (Scopus)

Controlling nanometer-scale crystal growth on a model biomaterial with a scanning force microscope

Hariadi, R., Langford, S. C. & Dickinson, J. T., Oct 15 2002, In : Langmuir. 18, 21, p. 7773-7776 4 p.

Research output: Contribution to journalArticle

Single crystal surfaces
Biocompatible Materials
Crystallization
Crystal growth
Biomaterials
2000
2 Citations (Scopus)

Mechanical detachment of nanometer particles strongly adhering to a substrate: An application of corrosive tribology

Dickinson, J. T., Hariadi, R. & Langford, S. C., 2000, In : Journal of Adhesion. 74, 1-4, p. 373-390 18 p.

Research output: Contribution to journalArticle

Caustics
tribology
Tribology
detachment
Atmospheric humidity

Scanning force microscope study of detachment of nanometer adhering particulates

Dickinson, J. T., Hariadi, R., Scudiero, L. & Langford, S. C., Sep 2000, In : Materials Science and Engineering A. 288, 2, p. 182-186 5 p.

Research output: Contribution to journalArticle

detachment
particulates
Microscopes
Salts
microscopes
1999
8 Citations (Scopus)

A scanning force microscope study of detachment of nanometer-sized particles from glass surfaces

Dickinson, J. T., Hariadi, R., Scudiero, L. & Langford, S. C., 1999, In : Tribology Letters. 7, 2-3, p. 113-119 7 p.

Research output: Contribution to journalArticle

detachment
Atmospheric humidity
Microscopes
microscopes
Scanning
6 Citations (Scopus)

Scanning force microscope observations of particle detachment from substrates: The role of water vapor in tribological debonding

Hariadi, R., Langford, S. C. & Dickinson, J. T., Nov 1 1999, In : Journal of Applied Physics. 86, 9, p. 4885-4891 7 p.

Research output: Contribution to journalArticle

detachment
water vapor
microscopes
scanning
humidity

Scanning force microscope studies of detachment of nanometer adhering particulates

Dickinson, J. T., Hariadi, R., Scudiero, L. & Langford, S. C., 1999, In : Unknown Journal. 566, p. 273-278 6 p.

Research output: Contribution to journalArticle

Shear Strength
Microscopes
Salts
Humidity
Scanning