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Research Output 2001 2019

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2019

Bioprospecting of Native Efflux Pumps To Enhance Furfural Tolerance in Ethanologenic Escherichia coli

Kurgan, G., Panyon, L. A., Rodriguez-Sanchez, Y., Pacheco, E., Nieves, L. M., Mann, R., Nielsen, D. & Wang, X., Mar 15 2019, In : Applied and environmental microbiology. 85, 6

Research output: Contribution to journalArticle

Furaldehyde
furfural
multiple drug resistance
Multiple Drug Resistance
transporters

Engineering a Synthetic, Catabolically Orthogonal Coculture System for Enhanced Conversion of Lignocellulose-Derived Sugars to Ethanol

Flores, A. D., Ayla, E. Z., Nielsen, D. & Wang, X., May 17 2019, In : ACS Synthetic Biology. 8, 5, p. 1089-1099 11 p.

Research output: Contribution to journalArticle

Coculture Techniques
Sugars
Fermentation
Xylose
Ethanol
2018
3 Citations (Scopus)

Catalytic conversion of cyanobacteria-derived fatty acids to alkanes for biorenewable synthetic paraffinic kerosene

Schulz, T. C., Oelschlager, M., Thompson, S. T., Vermaas, W., Nielsen, D. & Lamb, H. H., Jan 1 2018, In : Sustainable Energy and Fuels. 2, 4, p. 882-893 12 p.

Research output: Contribution to journalArticle

Open Access
Kerosene
Fatty acids
Paraffins
Purification
Acids
9 Citations (Scopus)

Muconic Acid Production via Alternative Pathways and a Synthetic "metabolic Funnel"

Thompson, B., Pugh, S., Machas, M. & Nielsen, D., Feb 16 2018, In : ACS Synthetic Biology. 7, 2, p. 565-575 11 p.

Research output: Contribution to journalArticle

Acids
Phenols
Biosynthesis
phenol 2-monooxygenase
Phenol
2017
7 Citations (Scopus)

Expanding Upon Styrene Biosynthesis to Engineer a Novel Route to 2-Phenylethanol

Machas, M. S., Mckenna, R. & Nielsen, D., 2017, (Accepted/In press) In : Biotechnology Journal.

Research output: Contribution to journalArticle

Phenylethyl Alcohol
Styrene
Phenylalanine
Escherichia coli
Phosphoenolpyruvate
7 Citations (Scopus)

High Efficiency and Facile Butanol Recovery with Magnetically Responsive Micro/Mesoporous Carbon Adsorbents

Staggs, K. W., Qiang, Z., Madathil, K., Gregson, C., Xia, Y., Vogt, B. & Nielsen, D., Jan 3 2017, In : ACS Sustainable Chemistry and Engineering. 5, 1, p. 885-894 10 p.

Research output: Contribution to journalArticle

Butanols
Butenes
Adsorbents
Carbon
Recovery
2016
11 Citations (Scopus)

Engineering and comparison of non-natural pathways for microbial phenol production

Thompson, B., Machas, M. & Nielsen, D., Aug 1 2016, In : Biotechnology and Bioengineering. 113, 8, p. 1745-1754 10 p.

Research output: Contribution to journalArticle

Phenol
Phenols
Tyrosine Phenol-Lyase
Biosynthesis
Hydroxybenzoates
32 Citations (Scopus)

Membrane engineering via trans unsaturated fatty acids production improves Escherichia coli robustness and production of biorenewables

Tan, Z., Yoon, J. M., Nielsen, D., Shanks, J. V. & Jarboe, L. R., May 1 2016, In : Metabolic Engineering. 35, p. 105-113 9 p.

Research output: Contribution to journalArticle

Unsaturated fatty acids
Trans Fatty Acids
Unsaturated Fatty Acids
Escherichia coli
Membranes
22 Citations (Scopus)

Production of biorenewable styrene: utilization of biomass-derived sugars and insights into toxicity

Lian, J., McKenna, R., Rover, M. R., Nielsen, D., Wen, Z. & Jarboe, L. R., Jan 23 2016, (Accepted/In press) In : Journal of Industrial Microbiology and Biotechnology. p. 1-10 10 p.

Research output: Contribution to journalArticle

Styrene
Sugars
Biomass
Toxicity
Membranes
2015
4 Citations (Scopus)

Activity of Lactobacillus brevis alcohol dehydrogenase on primary and secondary alcohol biofuel precursors

Halloum, I., Thompson, B., Pugh, S. & Nielsen, D., Dec 1 2015, In : Fermentation. 1, 1, p. 24-37 14 p.

Research output: Contribution to journalArticle

Open Access
Lactobacillus brevis
Biofuels
Alcohol Dehydrogenase
alcohol dehydrogenase
biofuels
19 Citations (Scopus)

Comparing in situ removal strategies for improving styrene bioproduction

McKenna, R., Moya, L., McDaniel, M. & Nielsen, D., Jan 1 2015, In : Bioprocess and Biosystems Engineering. 38, 1, p. 165-174 10 p.

Research output: Contribution to journalArticle

Styrene
Gases
Solvent extraction
Escherichia coli
Toxicity
12 Citations (Scopus)

Creating pathways towards aromatic building blocks and fine chemicals

Thompson, B., Machas, M. & Nielsen, D., Dec 1 2015, In : Current Opinion in Biotechnology. 36, p. 1-7 7 p.

Research output: Contribution to journalArticle

Synthetic Biology
Metabolic Engineering
Petroleum
Enzymes
Metabolic engineering
18 Citations (Scopus)

Engineering Escherichia coli for renewable benzyl alcohol production

Pugh, S., McKenna, R., Halloum, I. & Nielsen, D., Dec 1 2015, In : Metabolic Engineering Communications. 2, p. 39-45 7 p.

Research output: Contribution to journalArticle

Benzyl Alcohol
Escherichia coli
Alcohols
Biosynthesis
Glucose
27 Citations (Scopus)

Improving n-butanol production in batch and semi-continuous processes through integrated product recovery

Staggs, K. W. & Nielsen, D., Apr 20 2015, In : Process Biochemistry. 50, 10, p. 1487-1498 12 p.

Research output: Contribution to journalArticle

1-Butanol
Butenes
Recovery
Fermentation
Volatilization
2014
3-Hydroxybutyric Acid
Cyanobacteria
corrigendum
7 Citations (Scopus)

'Hybrid' processing strategies for expanding and improving the synthesis of renewable bioproducts

Thompson, B., Moon, T. S. & Nielsen, D., 2014, In : Current Opinion in Biotechnology. 30, p. 17-23 7 p.

Research output: Contribution to journalArticle

Biomass
Metabolic Engineering
Biocatalysts
Biosynthesis
Petroleum
30 Citations (Scopus)

In situ butanol recovery from Clostridium acetobutylicum fermentations by expanded bed adsorption

Wiehn, M., Staggs, K., Wang, Y. & Nielsen, D., Jan 2014, In : Biotechnology Progress. 30, 1, p. 68-78 11 p.

Research output: Contribution to journalArticle

Clostridium acetobutylicum
Butanols
Adsorption
Fermentation
Biofouling
28 Citations (Scopus)

Rational and combinatorial approaches to engineering styrene production by Saccharomyces cerevisiae

McKenna, R., Thompson, B., Pugh, S. & Nielsen, D., 2014, In : Microbial Cell Factories. 13, p. 123 1 p.

Research output: Contribution to journalArticle

Styrene
Yeast
Saccharomyces cerevisiae
3-Deoxy-7-Phosphoheptulonate Synthase
Phenylalanine
19 Citations (Scopus)

Rational engineering of a novel pathway for producing the aromatic compounds p-hydroxybenzoate, protocatechuate, and catechol in Escherichia coli

Pugh, S., McKenna, R., Osman, M., Thompson, B. & Nielsen, D., 2014, In : Process Biochemistry. 49, 11, p. 1843-1850 8 p.

Research output: Contribution to journalArticle

Aromatic compounds
Biosynthesis
Escherichia coli
Glucose
Bioreactors
17 Citations (Scopus)

Technoeconomic evaluation of bio-based styrene production by engineered Escherichia coli

Claypool, J. T., Raman, D. R., Jarboe, L. R. & Nielsen, D., 2014, In : Journal of Industrial Microbiology and Biotechnology. 41, 8, p. 1211-1216 6 p.

Research output: Contribution to journalArticle

Styrene
Escherichia coli
Feedstocks
Sales
Sugars
2013
8 Citations (Scopus)

Adsorption of short-chain alcohols by hydrophobic silica aerogels

Wiehn, M., Levario, T. J., Staggs, K., Linneen, N., Wang, Y., Pfeffer, R., Lin, J. & Nielsen, D., Dec 26 2013, In : Industrial and Engineering Chemistry Research. 52, 51, p. 18379-18385 7 p.

Research output: Contribution to journalArticle

Aerogels
Silicon Dioxide
Alcohols
Silica
Adsorption

Engineering Cyanobacteria for Continuous Production of 3-Hydroxybutyrate Directly from CO2

Wang, B., Pugh, S., Nielsen, D. R., Zhang, W. & Meldrum, D., 2013, In : Metab. Eng.. 16, p. 68-77

Research output: Contribution to journalArticle

92 Citations (Scopus)

Engineering cyanobacteria for photosynthetic production of 3-hydroxybutyrate directly from CO2

Wang, B., Pugh, S., Nielsen, D., Zhang, W. & Meldrum, D., Mar 2013, In : Metabolic Engineering. 16, 1, p. 68-77 10 p.

Research output: Contribution to journalArticle

3-Hydroxybutyric Acid
Cyanobacteria
Synechocystis
Biosynthesis
Chemical industry
38 Citations (Scopus)

Engineering Escherichia coli for renewable production of the 5-carbon polyamide building-blocks 5-aminovalerate and glutarate

Adkins, J., Jordan, J. & Nielsen, D. R., Jun 2013, In : Biotechnology and Bioengineering. 110, 6, p. 1726-1734 9 p.

Research output: Contribution to journalArticle

Glutarates
Nylons
Polyamides
Escherichia coli
Lysine
38 Citations (Scopus)

Engineering Escherichia coli for Renewable Production of the 5- Carbon Polyamide Building-Blocks 5-Aminovalerate and Glutarate

Adkins, J., Jordan, J. & Nielsen, D. R., 2013, In : Biotechnol. Bioeng. 110, p. 1726-1734

Research output: Contribution to journalArticle

3 Citations (Scopus)

From promise to practice

Nielsen, D. & Moon, T. S., Dec 2013, In : EMBO Reports. 14, 12, p. 1034-1038 5 p.

Research output: Contribution to journalArticle

Synthetic Biology
3 Citations (Scopus)

From Promise to Practice. The Role of Synthetic Biology in Green Chemistry

Nielsen, D. R. & Moon, T. S., 2013, In : EMBO Reports.

Research output: Contribution to journalArticle

19 Citations (Scopus)

Microbial production of the aromatic building-blocks (S)-styrene oxide and (R)-1,2-phenylethanediol from renewable resources

Mckenna, R., Pugh, S., Thompson, B. & Nielsen, D. R., Dec 2013, In : Biotechnology Journal. 8, 12, p. 1465-1475 11 p.

Research output: Contribution to journalArticle

styrene oxide
Styrene
Dioxygenases
Pseudomonas putida
Poisons
19 Citations (Scopus)

Microbial Production of the Aromatic Building-Blocks (S)-Styrene Oxide and (R)-1,2-Phenylethanediol from Renewable Resources

McKenna, R., Pugh, S., Thompson, B. & Nielsen, D. R., 2013, In : Biotechnol. J..

Research output: Contribution to journalArticle

6 Citations (Scopus)

Solid-phase extraction of long-chain fatty acids from aqueous solution

Yuan, W., Wiehn, M., Wang, Y., Kim, H. W., Rittmann, B. & Nielsen, D., 2013, In : Separation and Purification Technology. 106, p. 1-7 7 p.

Research output: Contribution to journalArticle

Laurates
Fatty acids
Adsorbents
Fatty Acids
Ion exchange
6 Citations (Scopus)

Solid-Phase Extraction of Long-Chain Fatty Acids from Aqueous Solution

Yuan, W., Wiehn, M., Wang, Y., Kim, H. W., Rittmann, B. E. & Nielsen, D. R., 2013, In : Sep. Purif. Technol.. 106, p. 1-7

Research output: Contribution to journalArticle

2012
44 Citations (Scopus)

Engineering microbial chemical factories to produce renewable "biomonomers"

Adkins, J., Pugh, S., McKenna, R. & Nielsen, D., 2012, In : Frontiers in Microbiology. 3, AUG, Article313.

Research output: Contribution to journalArticle

Chemical Engineering
Metabolic Engineering
Nylons
Plastics
Polymers
44 Citations (Scopus)

Engineering Microbial Chemical Factories to Produce Renewable ‘Biomonomers’

Adkins, J., Pugh, S., McKenna, R. & Nielsen, D. R., 2012, In : Front. Microbio.. 3, p. 313

Research output: Contribution to journalArticle

32 Citations (Scopus)

Rapid adsorption of alcohol biofuels by high surface area mesoporous carbons

Levario, T. J., Dai, M., Yuan, W., Vogt, B. D. & Nielsen, D. R., Jan 15 2012, In : Microporous and Mesoporous Materials. 148, 1, p. 107-114 8 p.

Research output: Contribution to journalArticle

Biofuels
adsorbents
Adsorbents
alcohols
Alcohols
32 Citations (Scopus)

Rapid Adsorption of Alcohol Biofuels by High Surface Area Mesoporous Carbons

Levario, T. J., Dai, M., Yuan, W., Vogt, B. D. & Nielsen, D. R., 2012, In : Micropor. Mesopor. Mat.. 148, p. 107-114

Research output: Contribution to journalArticle

7 Citations (Scopus)

Sensitivity analysis of a proposed model mechanism for newly created glucose-6-oxidases

Moon, T. S., Nielsen, D. & Prather, K. L. J., Aug 2012, In : AICHE Journal. 58, 8, p. 2303-2308 6 p.

Research output: Contribution to journalArticle

Glucose Oxidase
Sensitivity analysis
Glucose
Oxidoreductases
Enzyme Induction
7 Citations (Scopus)

Sensitivity Analysis of a Proposed Model Mechanism for Newly Created Glucose-6-Oxidases

Moon, T. S., Nielsen, D. R. & Prather, K. J., 2012, In : AIChE J.. 58, p. 2303-2308

Research output: Contribution to journalArticle

2011
10 Citations (Scopus)

Advances and opportunities at the interface between microbial bioenergy and nanotechnology

Pugh, S., McKenna, R., Moolick, R. & Nielsen, D., Feb 2011, In : Canadian Journal of Chemical Engineering. 89, 1, p. 2-12 11 p.

Research output: Contribution to journalArticle

Nanotechnology
Genetic engineering
Biofuels
Nanofibers
Nanostructured materials
10 Citations (Scopus)

Advances and Opportunities at the Interface between Microbial Bioenergy and Nanotechnology

Pugh, S., McKenna, R., Moolick, R. & Nielsen, D. R., 2011, In : Can. J. Chem. Eng.. 89, p. 1-12

Research output: Contribution to journalArticle

116 Citations (Scopus)

Styrene biosynthesis from glucose by engineered E. coli

McKenna, R. & Nielsen, D. R., Sep 2011, In : Metabolic Engineering. 13, 5, p. 544-554 11 p.

Research output: Contribution to journalArticle

Styrene
Biosynthesis
Escherichia coli
Glucose
Phenylalanine
116 Citations (Scopus)

Styrene Biosynthesis from Glucose by Engineered E. coli

McKenna, R. & Nielsen, D. R., 2011, In : Metab. Eng.. 1, p. 544-554

Research output: Contribution to journalArticle

Styrene Biosynthesis from Glucose by Engineered E. coli

McKenna, R. & Nielsen, D. R., 2011, In : Nature Chem. Biol.. 7, p. 576

Research output: Contribution to journalArticle

2010
9 Citations (Scopus)

A strategic approach for the design and operation of two-phase partitioning bioscrubbers for the treatment of volatile organic compounds

Yeom, S. H., Daugulis, A. J. & Nielsen, D. R., Nov 2010, In : Biotechnology Progress. 26, 6, p. 1777-1786 10 p.

Research output: Contribution to journalArticle

Volatile Organic Compounds
Benzene
Oxygen
Achromobacter denitrificans
Solubility
9 Citations (Scopus)

A Strategic Approach for the Design and Operation of Two-phase Partitioning Bioscrubbers for the Treatment of Volatile Organic Compounds

Yeom, S. H., Daugulis, A. J. & Nielsen, D. R., 2010, In : Biotechnol. Progr.. 26, p. 1777-1786

Research output: Contribution to journalArticle

Engineering Acetoin and meso-2,3-Butanediol Biosynthesis in E. coli

Nielsen, D. R., Yoon, S. H., Yuan, C. J. & Prather, K. J., 2010, In : Biotechnol. J.. 5, p. 274-284

Research output: Contribution to journalArticle

2 Citations (Scopus)

Estimating the cellular maintenance coefficient and its use in the design of two-phase partitioning bioscrubbers

Yeom, S. H., Daugulis, A. J. & Nielsen, D. R., 2010, In : Bioproc. Biosyst. Eng.. 33, p. 731-739

Research output: Contribution to journalArticle

2 Citations (Scopus)

Estimating the cellular maintenance coefficient and its use in the design of two-phase partitioning bioscrubbers

Yeom, S. H., Daugulis, A. J. & Nielsen, D., Aug 2010, In : Bioprocess and Biosystems Engineering. 33, 6, p. 731-739 9 p.

Research output: Contribution to journalArticle

Maintenance
Achromobacter denitrificans
Oxygen
Benzene
Volatile organic compounds
69 Citations (Scopus)

Metabolic engineering of acetoin and meso-2,3-butanediol biosynthesis in E. coli

Nielsen, D., Yoon, S. H., Yuan, C. J. & Prather, K. L. J., Mar 2010, In : Biotechnology Journal. 5, 3, p. 274-284 11 p.

Research output: Contribution to journalArticle

Acetoin
Metabolic Engineering
acetolactate decarboxylase
Escherichia coli
Pyruvic Acid
39 Citations (Scopus)

Predicting the adsorption of second generation biofuels by polymeric resins with applications for in situ product recovery (ISPR)

Nielsen, D., Amarasiriwardena, G. S. & Prather, K. L. J., Apr 2010, In : Bioresource Technology. 101, 8, p. 2762-2769 8 p.

Research output: Contribution to journalArticle

Biofuels
Butenes
biofuel
alcohol
resin
39 Citations (Scopus)

Predicting the Adsorption of Second Generation Biofuels by Polymeric Resins with Applications for In Situ Product Recovery (ISPR)

Nielsen, D. R., Amarasiriwardena, G. S. & Prather, K. J., 2010, In : Biores. Technol.. 101, p. 2762-2769

Research output: Contribution to journalArticle