Research Output 1870 2019

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Review article
2019

Cochlear Implantation for Single-Sided Deafness: A New Treatment Paradigm

Zeitler, D. M. & Dorman, M., Jan 1 2019, In : Journal of Neurological Surgery, Part B: Skull Base. 80, 2, p. 178-186 9 p.

Research output: Contribution to journalReview article

Cochlear Implantation
Deafness
Quality of Life
Sound Localization
Neuronal Plasticity

Distributed adaptive search in T Cells: Lessons from ants

Moses, M. E., Cannon, J. L., Gordon, D. M. & Forrest, S., Jan 1 2019, In : Frontiers in Immunology. 10, JUN, 1357.

Research output: Contribution to journalReview article

Open Access
Ants
T-Lymphocytes
Immune System
Social Adjustment
Aptitude
3 Citations (Scopus)

Emerging applications of peptide-oligonucleotide conjugates: Bioactive scaffolds, self-assembling systems, and hybrid nanomaterials

Macculloch, T., Buchberger, A. & Stephanopoulos, N., Jan 1 2019, In : Organic and Biomolecular Chemistry. 17, 7, p. 1668-1682 15 p.

Research output: Contribution to journalReview article

Nanostructures
oligonucleotides
activity (biology)
assembling
Nanostructured materials

Evolution and ecology of plant viruses

Lefeuvre, P., Martin, D. P., Elena, S. F., Shepherd, D. N., Roumagnac, P. & Varsani, A., Jan 1 2019, In : Nature Reviews Microbiology.

Research output: Contribution to journalReview article

Plant Viruses
Ecology
Viruses
Ecosystem
Tobacco Mosaic Virus
3 Citations (Scopus)

Extracellular vesicles as cancer liquid biopsies: From discovery, validation, to clinical application

Zhao, Z., Fan, J., Hsu, Y. M. S., Lyon, C. J., Ning, B. & Hu, Y., Jan 1 2019, In : Lab on a Chip. 19, 7, p. 1114-1140 27 p.

Research output: Contribution to journalReview article

Biopsy
Biomarkers
Tumor Biomarkers
Liquids
Neoplasms

Modifying the Organ Matrix Pre-engraftment: A New Transplant Paradigm?

Yaron, J. R., Kwiecien, J. M., Zhang, L., Ambadapadi, S., Wakefield, D. N., Clapp, W. L., Dabrowski, W., Burgin, M., Munk, B. H., McFadden, D., Chen, H. & Lucas, A. R., Jan 1 2019, In : Trends in Molecular Medicine.

Research output: Contribution to journalReview article

Transplants
Glycocalyx
Tissue Survival
Graft Rejection
Organ Transplantation

Multifunctional radical quenchers as potential therapeutic agents for the treatment of mitochondrial dysfunction

Ji, X., Khdour, O. & Hecht, S., Jan 1 2019, In : Future Medicinal Chemistry. 11, 13, p. 1605-1624 20 p.

Research output: Contribution to journalReview article

Reactive Oxygen Species
Protective Agents
Mitochondrial Diseases
Ubiquinone
Tocopherols
4 Citations (Scopus)

Neuronal Development of Hearing and Language: Cochlear Implants and Critical Periods

Kral, A., Dorman, M. & Wilson, B. S., Jan 1 2019, In : Annual Review of Neuroscience. 42, p. 47-65 19 p.

Research output: Contribution to journalReview article

Open Access
Language Development
Cochlear Implants
Hearing
Brain
Neural Prostheses

On the need to integrate uncertainty into U.S. water resource planning

Hart, O. E. & Halden, R., Nov 15 2019, In : Science of the Total Environment. 691, p. 1262-1270 9 p.

Research output: Contribution to journalReview article

Water resources
water resource
water demand
Planning
Drought

Peptide-Oligonucleotide Hybrid Molecules for Bioactive Nanomaterials

Stephanopoulos, N., Jan 1 2019, In : Bioconjugate Chemistry.

Research output: Contribution to journalReview article

Nanostructures
Oligonucleotides
Nanostructured materials
Peptides
DNA

Poxvirus oncolytic virotherapy

Torres-Domínguez, L. E. & McFadden, D., Jun 3 2019, In : Expert Opinion on Biological Therapy. 19, 6, p. 561-573 13 p.

Research output: Contribution to journalReview article

Oncolytic Virotherapy
Poxviridae
Tumors
Viruses
Neoplasms
64 Citations (Scopus)

Recent developments in phase change materials for energy storage applications: A review

Nazir, H., Batool, M., Bolivar Osorio, F. J., Isaza-Ruiz, M., Xu, X., Vignarooban, K., Phelan, P., Inamuddin & Mada Kannan, A., Feb 1 2019, In : International Journal of Heat and Mass Transfer. 129, p. 491-523 33 p.

Research output: Contribution to journalReview article

phase change materials
Phase change materials
energy storage
heat storage
Thermal energy

Recent innovations in membrane-protein structural biology [version 1; referees: 3 approved]

Allen, J., Jan 1 2019, In : F1000Research. 8, 211.

Research output: Contribution to journalReview article

Open Access
Membrane Proteins
Innovation
Crystals
X-Rays
X rays

Single stranded dna viruses associated with capybara faeces sampled in brazil

Fontenele, R. S., Lacorte, C., Lamas, N. S., Schmidlin, K., Varsani, A. & Ribeiro, S. G., Aug 1 2019, In : Viruses. 11, 8, 710.

Research output: Contribution to journalReview article

Open Access
Feces
Brazil
Rodentia
Viruses
DNA Viruses
1 Citation (Scopus)

The cryo-EM method microcrystal electron diffraction (MicroED)

Nannenga, B. & Gonen, T., May 1 2019, In : Nature Methods. 16, 5, p. 369-379 11 p.

Research output: Contribution to journalReview article

Cryoelectron Microscopy
Microcrystals
Electron diffraction
Electron microscopy
Electrons
Open Access
Microbiota
microorganisms
neoplasms
energy
Growth

Tumor-derived exosomes (TDEs): How to avoid the sting in the tail

Wan, M. H., Ning, B., Spiegel, S., Lyon, C. J. & Hu, Y., Jan 1 2019, In : Medicinal Research Reviews.

Research output: Contribution to journalReview article

Open Access
Exosomes
Bites and Stings
Neoplasms
Phenotype
Half-Life
2018
17 Citations (Scopus)

Adaptive global innovative learning environment for glioblastoma: GBM AGILE

GBM AGILE Network, Feb 15 2018, In : Clinical Cancer Research. 24, 4, p. 737-743 7 p.

Research output: Contribution to journalReview article

Glioblastoma
Learning
Biomarkers
Therapeutics
Random Allocation
4 Citations (Scopus)

Advances in the application of comprehensive two-dimensional gas chromatography in metabolomics

Higgins Keppler, E. A., Jenkins, C. L., Davis, T. J. & Bean, H., Dec 1 2018, In : TrAC - Trends in Analytical Chemistry. 109, p. 275-286 12 p.

Research output: Contribution to journalReview article

Gas chromatography
Complex Mixtures
Sampling
Metabolomics
3 Citations (Scopus)

Antibiotic and pesticide susceptibility and the Anthropocene operating space

Living with Resistance project, Nov 1 2018, In : Nature Sustainability. 1, 11, p. 632-641 10 p.

Research output: Contribution to journalReview article

Biocides
biocides
Disinfectants
Antibiotics
Pesticides
Public Health Informatics
Information Storage and Retrieval
Zoonoses
Public health
Decision support systems
1 Citation (Scopus)

Avian influenza virus ecology and evolution through a climatic lens

Morin, C. W., Stoner-Duncan, B., Winker, K., Scotch, M., Hess, J. J., Meschke, J. S., Ebi, K. L. & Rabinowitz, P. M., Oct 1 2018, In : Environment International. 119, p. 241-249 9 p.

Research output: Contribution to journalReview article

avian influenza
virus
ecology
water temperature
persistence
23 Citations (Scopus)

Biofilms, active substrata, and me

Rittmann, B., Apr 1 2018, In : Water Research. 132, p. 135-145 11 p.

Research output: Contribution to journalReview article

Biofilms
biofilm
Anodes
Photocatalysis
substrate
119 Citations (Scopus)

Circulating tumor DNA analysis in patients with cancer: American society of clinical oncology and college of American pathologists joint review

Merker, J. D., Oxnard, G. R., Compton, C., Diehn, M., Hurley, P., Lazar, A. J., Lindeman, N., Lockwood, C. M., Rai, A. J., Schilsky, R. L., Tsimberidou, A. M., Vasalos, P., Billman, B. L., Oliver, T. K., Bruinooge, S. S., Hayes, D. F. & Turner, N. C., Jun 1 2018, In : Journal of Clinical Oncology. 36, 16, p. 1631-1641 11 p.

Research output: Contribution to journalReview article

Medical Oncology
DNA
Neoplasms
Pathologists
Edetic Acid
9 Citations (Scopus)

Circulating tumor DNA analysis in patients with cancer: American society of clinical oncology and college of American pathologists joint review

Merker, J. D., Oxnard, G. R., Compton, C., Diehn, M., Hurley, P., Lazar, A. J., Lindeman, N., Lockwood, C. M., Rai, A. J., Schilsky, R. L., Tsimberidou, A. M., Vasalos, P., Billman, B. L., Oliver, T. K., Bruinooge, S. S., Hayes, D. F. & Turner, N. C., Oct 1 2018, In : Archives of Pathology and Laboratory Medicine. 142, 10, p. 1242-1253 12 p.

Research output: Contribution to journalReview article

Medical Oncology
DNA
Neoplasms
Pathologists
Edetic Acid
8 Citations (Scopus)

Development of antibody therapeutics against flaviviruses

Sun, H., Chen, Q. & Lai, H., Jan 1 2018, In : International Journal of Molecular Sciences. 19, 1, 54.

Research output: Contribution to journalReview article

Flavivirus
Monoclonal antibodies
antibodies
Antibodies
Monoclonal Antibodies
3 Citations (Scopus)

Facilitating earlier diagnosis of cardiovascular disease through point-of-care biosensors: A review

Honikel, M. M., Lin, C. E., Probst, D. & LaBelle, J., Jan 1 2018, In : Critical Reviews in Biomedical Engineering. 46, 1, p. 53-82 30 p.

Research output: Contribution to journalReview article

Biosensors
Biomarkers
Electrochemical impedance spectroscopy
Sensors
Electrocardiography
6 Citations (Scopus)

Genetic diversity on the sex chromosomes

Wilson Sayres, M., Apr 1 2018, In : Genome Biology and Evolution. 10, 4, p. 1064-1078 15 p.

Research output: Contribution to journalReview article

Sex Chromosomes
sex chromosomes
chromosome
genetic variation
sex determination
8 Citations (Scopus)

Launching the C-HPP neXt-CP50 Pilot Project for Functional Characterization of Identified Proteins with No Known Function

Paik, Y. K., Lane, L., Kawamura, T., Chen, Y. J., Cho, J. Y., LaBaer, J., Yoo, J. S., Domont, G., Corrales, F., Omenn, G. S., Archakov, A., Encarnación-Guevara, S., Lui, S., Salekdeh, G. H., Cho, J. Y., Kim, C. Y. & Overall, C. M., Dec 7 2018, In : Journal of Proteome Research. 17, 12, p. 4042-4050 9 p.

Research output: Contribution to journalReview article

Launching
Human Chromosomes
Proteome
Chromosomes
Proteins

Life History Trade-Offs in Tumors

Boddy, A. M., Huang, W. & Aktipis, C. A., Dec 1 2018, In : Current Pathobiology Reports. 6, 4, p. 201-207 7 p.

Research output: Contribution to journalReview article

Open Access
Neoplasms
Cell Proliferation
Ecology
Cell Movement
Cell Survival
2 Citations (Scopus)

Lost in the crowd: identifying targetable MHC class I neoepitopes for cancer immunotherapy

Wilson, E. A. & Anderson, K., Dec 2 2018, In : Expert Review of Proteomics. 15, 12, p. 1065-1077 13 p.

Research output: Contribution to journalReview article

Immunotherapy
Tumors
Epitopes
Neoplasms
Bearings (structural)
5 Citations (Scopus)

Metal-chelating non-canonical amino acids in metalloprotein engineering and design

Almhjell, P. J. & Mills, J., Aug 1 2018, In : Current Opinion in Structural Biology. 51, p. 170-176 7 p.

Research output: Contribution to journalReview article

Metalloproteins
Metals
Amino Acids
Ions
Proteins
8 Citations (Scopus)

Modeling Host-Pathogen Interactions in the Context of the Microenvironment: Three-Dimensional Cell Culture Comes of Age

Barrila, J., Crabbé, A., Yang, J., Franco, K., Nydam, S. D., Forsyth, R. J., Davis, R. R., Gangaraju, S., Ott, C. M., Coyne, C. B., Bissell, M. J. & Nickerson, C., Nov 1 2018, In : Infection and Immunity. 86, 11

Research output: Contribution to journalReview article

Host-Pathogen Interactions
Communicable Diseases
Cell Culture Techniques
Microbiota
Organoids
8 Citations (Scopus)

Nanoporous materials in polymeric membranes for desalination

Cay-Durgun, P. & Thomas, M., Jun 1 2018, In : Current Opinion in Chemical Engineering. 20, p. 19-27 9 p.

Research output: Contribution to journalReview article

Polymeric membranes
Desalination
Membranes
Nanostructured materials
Thin films
4 Citations (Scopus)

Notes on recombination and reassortment in multipartite/segmented viruses

Varsani, A., Lefeuvre, P., Roumagnac, P. & Martin, D., Dec 1 2018, In : Current Opinion in Virology. 33, p. 156-166 11 p.

Research output: Contribution to journalReview article

Genetic Recombination
Viruses
Genome
Genome Components
Metagenomics
5 Citations (Scopus)

Recent developments in bifunctional air electrodes for unitized regenerative proton exchange membrane fuel cells – A review

Hunsom, M., Kaewsai, D. & Mada Kannan, A., Nov 15 2018, In : International Journal of Hydrogen Energy. p. 21478-21501 24 p.

Research output: Contribution to journalReview article

Regenerative fuel cells
Proton exchange membrane fuel cells (PEMFC)
fuel cells
membranes
Electrodes
3 Citations (Scopus)

Ribocomputing: Cellular Logic Computation Using RNA Devices

Kim, J., Yin, P. & Green, A., Feb 13 2018, In : Biochemistry. 57, 6, p. 883-885 3 p.

Research output: Contribution to journalReview article

Animals
RNA
Messenger RNA
Synthetic Biology
12 Citations (Scopus)

Role of extracellular vesicles in viral and bacterial infections: Pathogenesis, diagnostics, and therapeutics

Rodrigues, M., Fan, J., Lyon, C., Wan, M. & Hu, Y., Jan 1 2018, In : Theranostics. 8, 10, p. 2709-2721 13 p.

Research output: Contribution to journalReview article

Virus Diseases
Bacterial Infections
Exosomes
Therapeutics
Cell Communication
5 Citations (Scopus)

The role of citizen science in addressing grand challenges in food and agriculture research

Ryan, S. F., Adamson, N. L., Aktipis, C. A., Andersen, L. K., Austin, R., Barnes, L., Beasley, M. R., Bedell, K. D., Briggs, S., Chapman, B., Cooper, C. B., Corn, J. O., Creamer, N. G., Delborne, J. A., Domenico, P., Driscoll, E., Goodwin, J., Hjarding, A., Hulbert, J. M., Isard, S. & 22 others, Just, M. G., Kar Gupta, K., López-Uribe, M. M., O’Sullivan, J., Landis, E. A., Madden, A. A., McKenney, E. A., Nichols, L. M., Reading, B. J., Russell, S., Sengupta, N., Shapiro, L. R., Shell, L. K., Sheard, J. K., Shoemaker, D. D., Sorger, D. M., Starling, C., Thakur, S., Vatsavai, R. R., Weinstein, M., Winfrey, P. & Dunn, R. R., Nov 21 2018, In : Proceedings of the Royal Society B: Biological Sciences. 285, 1891, 20181977.

Research output: Contribution to journalReview article

Open Access
Agriculture
agriculture
Food
food
food science
6 Citations (Scopus)

Understanding cooperation through fitness interdependence

Aktipis, C. A., Cronk, L., Alcock, J., Ayers, J. D., Baciu, C., Balliet, D., Boddy, A. M., Curry, O. S., Krems, J. A., Muñoz, A., Sullivan, D., Sznycer, D., Wilkinson, G. S. & Winfrey, P., Jul 1 2018, In : Nature Human Behaviour. 2, 7, p. 429-431 3 p.

Research output: Contribution to journalReview article

Reproduction
Survival

Virotherapy as Potential Adjunct Therapy for Graft-Vs-Host Disease

Villa, N. & McFadden, D., Dec 1 2018, In : Current Pathobiology Reports. 6, 4, p. 247-263 17 p.

Research output: Contribution to journalReview article

Open Access
Graft vs Host Disease
Oncolytic Viruses
Myxoma virus
Hematopoietic Stem Cell Transplantation
Oncolytic Virotherapy
6 Citations (Scopus)

Viruses associated with Antarctic wildlife: From serology based detection to identification of genomes using high throughput sequencing

Smeele, Z. E., Ainley, D. G. & Varsani, A., Jan 2 2018, In : Virus Research. 243, p. 91-105 15 p.

Research output: Contribution to journalReview article

Serology
Spheniscidae
Genome
Viruses
Orthomyxoviridae
2017
1 Citation (Scopus)

Anorexia: A perverse effect of attempting to control the starvation response

Nesse, R., Jan 1 2017, In : Behavioral and Brain Sciences. 40, p. 31-32 2 p., e125.

Research output: Contribution to journalReview article

Bulimia
Anorexia
Starvation
Fats
Appetite

A peptide adhesive molded by magnesium glues Rubisco's subunits together

Wachter, R., Apr 21 2017, In : Journal of Biological Chemistry. 292, 16, p. 6851-6852 2 p.

Research output: Contribution to journalReview article

Ribulose-Bisphosphate Carboxylase
Glues
Adhesives
Magnesium
Carbon Cycle
56 Citations (Scopus)

Can Li-Ion batteries be the panacea for automotive applications?

Opitz, A., Badami, P., Shen, L., Vignarooban, K. & Mada Kannan, A., Feb 1 2017, In : Renewable and Sustainable Energy Reviews. 68, p. 685-692 8 p.

Research output: Contribution to journalReview article

Electric motors
Fuel economy
Secondary batteries
Environmental Protection Agency
Energy management
55 Citations (Scopus)

Classifying the evolutionary and ecological features of neoplasms

Maley, C., Aktipis, C. A., Graham, T. A., Sottoriva, A., Boddy, A. M., Janiszewska, M., Silva, A. S., Gerlinger, M., Yuan, Y., Pienta, K. J., Anderson, K., Gatenby, R., Swanton, C., Posada, D., Wu, C. I., Schiffman, J. D., Hwang, E. S., Polyak, K., Anderson, A. R. A., Brown, J. S. & 2 others, Greaves, M. & Shibata, D., Oct 1 2017, In : Nature Reviews Cancer. 17, 10, p. 605-619 15 p.

Research output: Contribution to journalReview article

Neoplasms
Ecology
Precision Medicine
Molecular Evolution
Epigenomics
4 Citations (Scopus)
innovation
Innovation
cells
Microbiota
organisms
28 Citations (Scopus)

Current and emerging techniques for antibiotic susceptibility tests

Syal, K., Mo, M., Yu, H., Iriya, R., Jing, W., Guodong, S., Wang, S., Grys, T. E., Haydel, S. & Tao, N., 2017, In : Theranostics. 7, 7, p. 1795-1805 11 p.

Research output: Contribution to journalReview article

Anti-Bacterial Agents
Microbial Genes
Bacteria
Wit and Humor
Microbiology
63 Citations (Scopus)

Engineering nucleic acid structures for programmable molecular circuitry and intracellular biocomputation

Li, J., Green, A., Yan, H. & Fan, C., Sep 25 2017, In : Nature Chemistry. 9, 11, p. 1056-1067 12 p.

Research output: Contribution to journalReview article

Nucleic acids
RNA
Nanotechnology
Nucleic Acids
Nanostructures
39 Citations (Scopus)

Evolutionary public health: introducing the concept

Wells, J. C. K., Nesse, R., Sear, R., Johnstone, R. A. & Stearns, S. C., Jul 29 2017, In : The Lancet. 390, 10093, p. 500-509 10 p.

Research output: Contribution to journalReview article

Public Health
Health
Poverty
Life Expectancy
Computer Simulation