Research Output 1870 2020

2020

Ex Vivo Virotherapy with Myxoma Virus to Treat Cancer

Villa, N. Y., Franco, L. S. & McFadden, G., Jan 1 2020, Methods in Molecular Biology. Humana Press Inc., p. 95-110 16 p. (Methods in Molecular Biology; vol. 2058).

Research output: Chapter in Book/Report/Conference proceedingChapter

Myxoma virus
Viruses
Neoplasms
Leukocytes
Rabbits

Mathematical Modeling and Analysis of Wastewater Treatment Plant Using the Cannibal Process

Xiong, J., Young, M. N., Marcus, A. K., Van Ginkel, S. W. & Rittmann, B. E., Feb 1 2020, In : Journal of Environmental Engineering (United States). 146, 2, 04019108.

Research output: Contribution to journalArticle

Wastewater treatment
Biomass
sludge
Anaerobic digestion
biomass
2019
3 Citations (Scopus)

A Bayesian Nonparametric Approach to Single Molecule Förster Resonance Energy Transfer

Sgouralis, I., Madaan, S., Djutanta, F., Kha, R., Hariadi, R. & Presse, S., Jan 24 2019, In : Journal of Physical Chemistry B. 123, 3, p. 675-688 14 p.

Research output: Contribution to journalArticle

Bayes Theorem
Energy Transfer
Photons
Energy transfer
energy transfer

A broader view on jamming: from spring networks to circle packings

F. Hagh, V., Corwin, E. I., Stephenson, K. & Thorpe, M., Jan 1 2019, In : Soft Matter. 15, 15, p. 3076-3084 9 p.

Research output: Contribution to journalArticle

jamming
Jamming
Elastic moduli
Triangulation
bulk modulus

Acclimation of nitrifying biomass to phenol leads to persistent resistance to inhibition

Zou, S., Yan, N., Zhang, C., Zhou, Y., Wu, X., Wang, J., Liu, Y., Zhang, Y. & Rittmann, B., Nov 25 2019, In : Science of the Total Environment. 693, 133622.

Research output: Contribution to journalArticle

Phenol
acclimation
Phenols
phenol
Biomass
16 Citations (Scopus)

Additional changes to taxonomy ratified in a special vote by the International Committee on Taxonomy of Viruses (October 2018)

Siddell, S. G., Walker, P. J., Lefkowitz, E. J., Mushegian, A. R., Adams, M. J., Dutilh, B. E., Gorbalenya, A. E., Harrach, B., Harrison, R. L., Junglen, S., Knowles, N. J., Kropinski, A. M., Krupovic, M., Kuhn, J. H., Nibert, M., Rubino, L., Sabanadzovic, S., Sanfaçon, H., Simmonds, P., Varsani, A. & 2 others, Zerbini, F. M. & Davison, A. J., Jan 1 2019, (Accepted/In press) In : Archives of Virology.

Research output: Contribution to journalArticle

Viruses
1 Citation (Scopus)

A dopamine-responsive signal transduction controls transcription of salmonella enterica serovar typhimurium virulence genes

Yang, D., Kong, Y., Sun, W., Kong, W. & Shi, Y., Mar 1 2019, In : mBio. 10, 2, e02772-18.

Research output: Contribution to journalArticle

Open Access
Salmonella enterica
Virulence
Signal Transduction
Dopamine
Salmonella

A family of small intrinsically disordered proteins involved in flagellum-dependent motility in salmonella enterica

Oguri, T., Kwon, Y., Woo, J. K. K., Prehna, G., Lee, H., Ning, M., Won, K. J., Lee, J., Mei, S., Shi, Y., Jeong, H. & Lee, H., Jan 1 2019, In : Journal of Bacteriology. 201, 2, e00415-18.

Research output: Contribution to journalArticle

Intrinsically Disordered Proteins
Salmonella enterica
Flagella
Proteins
Operon
2 Citations (Scopus)

Aflatoxin Exposure, Child Stunting, and Dysbiosis in the Intestinal Microbiome among Children in Guatemala

Voth-Gaeddert, L. E., Torres, O., Maldonado, J., Krajmalnik-Brown, R., Rittmann, B. E. & Oerther, D. B., Aug 1 2019, In : Environmental Engineering Science. 36, 8, p. 958-968 11 p.

Research output: Contribution to journalArticle

Aflatoxins
Health
Food supply
exposure
morbidity
1 Citation (Scopus)

A Fruitful Discovery: Can Gut Bacteria Control Hyperactive Behavior?

Krajmalnik-Brown, R., Feb 7 2019, In : Molecular Cell. 73, 3, p. 395-397 3 p.

Research output: Contribution to journalShort survey

Lactobacillus brevis
Behavior Control
Carbohydrate Metabolism
Drosophila melanogaster
Diptera

A General Strategy for Engineering Noncanonical Amino Acid Dependent Bacterial Growth

Koh, M., Yao, A., Gleason, P. R., Mills, J. H. & Schultz, P. G., Oct 16 2019, In : Journal of the American Chemical Society. 141, 41, p. 16213-16216 4 p.

Research output: Contribution to journalArticle

Clamping devices
Amino acids
Proteins
Amino Acids
Escherichia coli
1 Citation (Scopus)

A human organotypic microfluidic tumor model permits investigation of the interplay between patient-derived fibroblasts and breast cancer cells

Truong, D. D., Kratz, A., Park, J. G., Barrientos, E. S., Saini, H., Nguyen, T., Pockaj, B., Mouneimne, G., LaBaer, J. & Nikkhah, M., Jun 15 2019, In : Cancer Research. 79, 12, p. 3139-3151 13 p.

Research output: Contribution to journalArticle

Microfluidics
Fibroblasts
Breast Neoplasms
Neoplasms
Glycoproteins
9 Citations (Scopus)

Alcohol and nicotine consumption trends in three U.S. communities determined by wastewater-based epidemiology

Chen, J., Venkatesan, A. K. & Halden, R., Mar 15 2019, In : Science of the Total Environment. 656, p. 174-183 10 p.

Research output: Contribution to journalArticle

Nicotine
Epidemiology
epidemiology
alcohol
Wastewater

ALG-1 Influences Accurate mRNA Splicing Patterns in the Caenorhabditis elegans Intestine and Body Muscle Tissues by Modulating Splicing Factor Activities

Kotagama, K., Schorr, A. L., Steber, H. S. & Mangone, M., Jul 1 2019, In : Genetics. 212, 3, p. 931-951 21 p.

Research output: Contribution to journalArticle

Caenorhabditis elegans
MicroRNAs
Intestines
Muscles
Messenger RNA
1 Citation (Scopus)

A multiplexed, electrochemical interface for gene-circuit-based sensors

Sadat Mousavi, P., Smith, S. J., Chen, J. B., Karlikow, M., Tinafar, A., Robinson, C., Liu, W., Ma, D., Green, A. A., Kelley, S. O. & Pardee, K., Jan 1 2019, (Accepted/In press) In : Nature Chemistry.

Research output: Contribution to journalArticle

Genes
Networks (circuits)
Sensors
Microelectrodes
DNA sequences
2 Citations (Scopus)

Anaerobic biodegradation of catechol by sediment microorganisms: Interactive roles of N reduction and S cycling

Zheng, X., Zhou, C., Liu, Z., Long, M., Luo, Y. H., Chen, T., Ontiveros-Valencia, A. & Rittmann, B. E., Sep 1 2019, In : Journal of Cleaner Production. 230, p. 80-89 10 p.

Research output: Contribution to journalArticle

Biodegradation
Microorganisms
biodegradation
Sediments
microorganism

An alternative framework for fluorescence correlation spectroscopy

Jazani, S., Sgouralis, I., Shafraz, O. M., Levitus, M., Sivasankar, S. & Pressé, S., Dec 1 2019, In : Nature communications. 10, 1, 3662.

Research output: Contribution to journalArticle

Open Access
Fluorescence Spectrometry
Fluorescence
Spectroscopy
fluorescence
spectroscopy

Analysis of tumour ecological balance reveals resource-dependent adaptive strategies of ovarian cancer

Nawaz, S., Trahearn, N. A., Heindl, A., Banerjee, S., Maley, C. C., Sottoriva, A. & Yuan, Y., Oct 2019, In : EBioMedicine. 48, p. 224-235 12 p.

Research output: Contribution to journalArticle

Open Access
Ovarian Neoplasms
Tumors
Neoplasms
Histology
Hazards
10 Citations (Scopus)

A nationwide survey of 31 organophosphate esters in sewage sludge from the United States

Wang, Y., Kannan, P., Halden, R. & Kannan, K., Mar 10 2019, In : Science of the Total Environment. 655, p. 446-453 8 p.

Research output: Contribution to journalArticle

Organophosphates
organophosphate
Sewage sludge
ester
Esters
10 Citations (Scopus)

A nationwide survey of the occurrence of melamine and its derivatives in archived sewage sludge from the United States

Zhu, H., Halden, R. & Kannan, K., Feb 1 2019, In : Environmental Pollution. 245, p. 994-999 6 p.

Research output: Contribution to journalArticle

Melamine
Sewage sludge
Sewage
Derivatives
Soil

An emergent understanding of strand displacement in RNA biology

Hong, F. & Sulc, P., Jan 1 2019, In : Journal of Structural Biology.

Research output: Contribution to journalArticle

RNA
Nucleic Acid Conformation
DNA
Clustered Regularly Interspaced Short Palindromic Repeats
RNA Folding

A noninvasive blood-based combinatorial proteomic biomarker assay to detect breast cancer in women over age 50 with BI-RADS 3, 4, or 5 Assessment

Henderson, M. C., Silver, M., Tran, Q., Letsios, E. E., Mulpuri, R., Reese, D. E., Lourenco, A. P., LaBaer, J., Anderson, K., Alpers, J., Costantini, C., Rohatgi, N., Ali, H., Baker, K., Northfelt, D. W., Ghosh, K., Grobmyer, S. R., Polen, W. & Wolf, J. K., Jan 1 2019, In : Clinical Cancer Research. 25, 1, p. 142-149 8 p.

Research output: Contribution to journalArticle

Proteomics
Breast
Biomarkers
Breast Neoplasms
Biopsy
14 Citations (Scopus)

A novel photocatalytic optical hollow-fiber with high photocatalytic activity for enhancement of 4-chlorophenol degradation

Zhong, N., Chen, M., Luo, Y., Wang, Z., Xin, X. & Rittmann, B., Jan 1 2019, In : Chemical Engineering Journal. 355, p. 731-739 9 p.

Research output: Contribution to journalArticle

chlorophenol
Optical fibers
Degradation
degradation
coating
3 Citations (Scopus)

Assessing the Potential to Monitor Plant-Based Diet Trends in Communities Using a Wastewater-Based Epidemiology Approach

Venkatesan, A. K., Chen, J., Driver, E., Gushgari, A. & Halden, R. U., Jan 1 2019, Wastewater-Based Epidemiology: Estimation of Community Consumption of Drugs and Diets. Burgard, D. A., Subedi, B. & Loganathan, B. G. (eds.). American Chemical Society, p. 187-198 12 p. (ACS Symposium Series; vol. 1319).

Research output: Chapter in Book/Report/Conference proceedingChapter

Phytoestrogens
Epidemiology
Nutrition
Wastewater
Biomarkers

Association of AEBP1 and NRN1 RNA expression with Alzheimer's disease and neurofibrillary tangle density in middle temporal gyrus

Piras, I. S., Krate, J., Delvaux, E., Nolz, J., De Both, M. D., Mastroeni, D., Serrano, G. E., Sue, L. I., Beach, T. G., Coleman, P. & Huentelman, M. J., Sep 15 2019, In : Brain Research. 1719, p. 217-224 8 p.

Research output: Contribution to journalArticle

Neurofibrillary Tangles
Temporal Lobe
Alzheimer Disease
RNA
Untranslated RNA
1 Citation (Scopus)
census data
Censuses
tourism
Agriculture
Taiwan

A Time-Discrete Haptic Feedback System for Use by Persons with Lower-Limb Prostheses During Gait

Kaplan, G., McDaniel, T., Abbas, J., Tadayon, R. & Panchanathan, S., Jan 1 2019, Universal Access in Human-Computer Interaction. Multimodality and Assistive Environments - 13th International Conference, UAHCI 2019, Held as Part of the 21st HCI International Conference, HCII 2019, Proceedings. Antona, M. & Stephanidis, C. (eds.). Springer Verlag, p. 250-261 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11573 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Haptic Feedback
Gait
Feedback Systems
Prosthetics
Person

Author Correction: Fully oxygenated water columns over continental shelves before the Great Oxidation Event (Nature Geoscience, (2019), 12, 3, (186-191), 10.1038/s41561-019-0309-7)

Ostrander, C. M., Nielsen, S. G., Owens, J. D., Kendall, B., Gordon, G., Romaniello, S. J. & Anbar, A., Jan 1 2019, In : Nature Geoscience.

Research output: Contribution to journalComment/debate

continental shelf
water column
oxidation
Open Access
Waste Water
Microbiology
Names
Microbiota
Water
Open Access
Health Status Indicators
Entropy
Antibodies
Open Access
RNA Splicing
Vaccines
Neoplasms
1 Citation (Scopus)

Author Correction: The wide utility of rabbits as models of human diseases (Experimental & Molecular Medicine, (2018), 50, 5, (66), 10.1038/s12276-018-0094-1)

Esteves, P. J., Abrantes, J., Baldauf, H. M., BenMohamed, L., Chen, Y., Christensen, N., González-Gallego, J., Giacani, L., Hu, J., Kaplan, G., Keppler, O. T., Knight, K. L., Kong, X. P., Lanning, D. K., Le Pendu, J., de Matos, A. L., Liu, J., Liu, S., Lopes, A. M., Lu, S. & 17 others, Lukehart, S., Manabe, Y. C., Neves, F., McFadden, G., Pan, R., Peng, X., de Sousa-Pereira, P., Pinheiro, A., Rahman, M., Ruvoën-Clouet, N., Subbian, S., Tuñón, M. J., van der Loo, W., Vaine, M., Via, L. E., Wang, S. & Mage, R., Jul 1 2019, In : Experimental and Molecular Medicine. 51, 7, 71.

Research output: Contribution to journalComment/debate

Open Access
Molecular Medicine
Licensure
Medicine
Rabbits

AutoAdaptive: A noise level–sensitive beamformer for Med el cochlear implant patients

Dorman, M. & Natale, S. C., Jan 1 2019, In : Journal of the American Academy of Audiology. 30, 8, p. 731-734 4 p.

Research output: Contribution to journalArticle

Cochlear Implants
Noise
Restaurants
Analysis of Variance
Research Design
6 Citations (Scopus)

Autonomous dynamic control of DNA nanostructure self-assembly

Green, L. N., Subramanian, H. K. K., Mardanlou, V., Kim, J., Hariadi, R. & Franco, E., Jan 1 2019, In : Nature Chemistry.

Research output: Contribution to journalArticle

Self assembly
Nanostructures
DNA
Nucleic acids
Nanotechnology
12 Citations (Scopus)

Autonomously designed free-form 2D DNA origami

Jun, H., Zhang, F., Shepherd, T., Ratanalert, S., Qi, X., Yan, H. & Bathe, M., Jan 1 2019, In : Science Advances. 5, 1, eaav0655.

Research output: Contribution to journalArticle

Open Access
DNA
Nanotechnology

Autonomous screening of groundwater remediation technologies in the subsurface using the In Situ Microcosm Array (ISMA)

Kalinowski, T., McClellan, K., Bruton, T. A., Krajmalnik-Brown, R., Driver, E. M. & Halden, R., Apr 5 2019, In : Journal of Hazardous Materials. 367, p. 668-675 8 p.

Research output: Contribution to journalArticle

Groundwater
Remediation
Aquifers
microcosm
Screening
2 Citations (Scopus)
Synechocystis
Biofilms
biofilm
nutrient content
Food

Bi-directional Recurrent Neural Network Models for Geographic Location Extraction in Biomedical Literature

Magge, A., Weissenbacher, D., Sarker, A., Scotch, M. & Gonzalez-Hernandez, G., Jan 1 2019, In : Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 24, p. 100-111 12 p.

Research output: Contribution to journalArticle

Geographic Locations
Neural Networks (Computer)
Natural Language Processing
Phylogeography
Nucleic Acid Databases
3 Citations (Scopus)

Bimodal Hearing or Bilateral Cochlear Implants? Ask the Patient

Gifford, R. H. & Dorman, M., May 1 2019, In : Ear and hearing. 40, 3, p. 501-516 16 p.

Research output: Contribution to journalArticle

Cochlear Implants
Hearing
Ear

Binomial nomenclature for virus species: a consultation

Siddell, S. G., Walker, P. J., Lefkowitz, E. J., Mushegian, A. R., Dutilh, B. E., Harrach, B., Harrison, R. L., Junglen, S., Knowles, N. J., Kropinski, A. M., Krupovic, M., Kuhn, J. H., Nibert, M. L., Rubino, L., Sabanadzovic, S., Simmonds, P., Varsani, A., Zerbini, F. M. & Davison, A. J., Jan 1 2019, (Accepted/In press) In : Archives of virology.

Research output: Contribution to journalArticle

Open Access
Terminology
Referral and Consultation
Viruses
Names
Virology
1 Citation (Scopus)

Bioavailable electron donors leached from leaves accelerate biodegradation of pyridine and quinoline

Lu, Q., Zhang, C., Wang, W., Yuan, B., Zhang, Y. & Rittmann, B., Mar 1 2019, In : Science of the Total Environment. 654, p. 473-479 7 p.

Research output: Contribution to journalArticle

Biodegradation
Pyridine
leachate
biodegradation
electron
1 Citation (Scopus)

Biodiversity and dynamics of cyanobacterial communities during blooms in temperate lake (Harsha Lake, Ohio, USA)

Zhu, B., Cao, H., Li, G., Du, W., Xu, G., Domingo, J. S., Gu, H., Xu, N., Duan, S. & Lu, J., Feb 1 2019, In : Harmful Algae. 82, p. 9-18 10 p.

Research output: Contribution to journalArticle

algal bloom
Cylindrospermopsis
Planktothrix
biodiversity
lakes

Breast Cancer and Dietary Intake of Endocrine Disruptors: a Review of Recent Literature

Bowes, D. A. & Halden, R. U., Jan 1 2019, In : Current Pathobiology Reports.

Research output: Contribution to journalReview article

Endocrine Disruptors
Breast Neoplasms
Adipose Tissue
Atrazine
Phytoestrogens
1 Citation (Scopus)

Building and breaking the cell wall in four acts: A kinesthetic and tactile role-playing exercise for teaching beta-lactam antibiotic mechanism of action and resistance

Popovich, J., Stephens, M., Celaya, H., Suwarno, S., Barclay, S., Yee, E., Dean, D. A., Farris, M. & Haydel, S., Jan 1 2019, In : Journal of Microbiology and Biology Education. 19, 1, 1462.

Research output: Contribution to journalArticle

Open Access
Role Playing
beta-lactam antibiotics
Touch
beta-Lactams
Cell Wall
10 Citations (Scopus)

Calcium isotopic signatures of carbonatite and silicate metasomatism, melt percolation and crustal recycling in the lithospheric mantle

Ionov, D. A., Qi, Y. H., Kang, J. T., Golovin, A. V., Oleinikov, O. B., Zheng, W., Anbar, A., Zhang, Z. F. & Huang, F., Mar 1 2019, In : Geochimica et Cosmochimica Acta. 248, p. 1-13 13 p.

Research output: Contribution to journalArticle

crustal recycling
Silicates
carbonatite
metasomatism
Carbonates

Cancer cell evolution through the ages

Maley, C. & Shibata, D., Aug 2 2019, In : Science (New York, N.Y.). 365, 6452, p. 440-441 2 p.

Research output: Contribution to journalComment/debate

sexually transmitted disease
tumor
cancer
DNA
2 Citations (Scopus)

Challenges and Promises of Metal Oxide Nanosensors

Tao, N., Apr 26 2019, In : ACS Sensors. 4, 4, 1 p.

Research output: Contribution to journalEditorial

Nanosensors
Oxides
metal oxides
Metals

Changes in Weight Status and the Intestinal Microbiota Among College Freshman, Aged 18 Y

Journey, E. K., Ortega-Santos, C. P., Bruening, M. & Whisner, C., Jan 1 2019, (Accepted/In press) In : Journal of Adolescent Health.

Research output: Contribution to journalArticle

Waist Circumference
Body Mass Index
Weights and Measures
Weight Gain
Multivariate Analysis
8 Citations (Scopus)

Changes to virus taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2019)

Walker, P. J., Siddell, S. G., Lefkowitz, E. J., Mushegian, A. R., Dempsey, D. M., Dutilh, B. E., Harrach, B., Harrison, R. L., Hendrickson, R. C., Junglen, S., Knowles, N. J., Kropinski, A. M., Krupovic, M., Kuhn, J. H., Nibert, M., Rubino, L., Sabanadzovic, S., Simmonds, P., Varsani, A., Zerbini, F. M. & 1 others, Davison, A. J., Jan 1 2019, In : Archives of virology.

Research output: Contribution to journalArticle

Open Access
Terminology
Viruses
RNA Replicase
RNA

Characterization of CO2 flux through hollow-fiber membranes using pH modeling

Shesh, T., Eustance, E., Lai, Y. J. & Rittmann, B., Dec 15 2019, In : Journal of Membrane Science. 592, 117389.

Research output: Contribution to journalArticle

inlet pressure
mass transfer
hollow
Mass transfer
Fluxes