Visualization of the phylogenetic content of five genomes using dekapentagonal maps

Olga Zhaxybayeva; Lutz Hamel; Jason Raymond; J. Peter Gogarten

doi:10.1186/gb-2004-5-3-r20

Visualization of the phylogenetic content of five genomes using dekapentagonal maps

Olga Zhaxybayeva, Lutz Hamel, Jason Raymond, J. Peter Gogarten

Arizona State University

Research output: Contribution to journal › Article › peer-review

16 Scopus citations

Abstract

The methods presented here summarize phylogenetic relationships of genomes in visually appealing and informative figures. Dekapentagonal maps depict phylogenetic information for orthologous genes present in five genomes, and provide a pre-screen for putatively horizontally transferred genes. If the majority of individual gene phylogenies are unresolved, bipartition histograms provide a means of uncovering and analyzing the plurality consensus. Analyses of genomes representing five photosynthetic bacterial phyla and of the prokaryotic contributions to the eukaryotic cell illustrate the utility of the methods.

Original language	English (US)
Article number	R20
Journal	Genome biology
Volume	5
Issue number	3
DOIs	https://doi.org/10.1186/gb-2004-5-3-r20
State	Published - Feb 2004

Keywords

Additional Data File
Chlorobium Tepidum
Phylogenetic Information
Probability Vector
Ureaplasma Urealyticum

ASJC Scopus subject areas

Genetics
Ecology, Evolution, Behavior and Systematics
Cell Biology

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10.1186/gb-2004-5-3-r20

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abstract = "The methods presented here summarize phylogenetic relationships of genomes in visually appealing and informative figures. Dekapentagonal maps depict phylogenetic information for orthologous genes present in five genomes, and provide a pre-screen for putatively horizontally transferred genes. If the majority of individual gene phylogenies are unresolved, bipartition histograms provide a means of uncovering and analyzing the plurality consensus. Analyses of genomes representing five photosynthetic bacterial phyla and of the prokaryotic contributions to the eukaryotic cell illustrate the utility of the methods.",

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AU - Hamel, Lutz

AU - Raymond, Jason

AU - Gogarten, J. Peter

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AB - The methods presented here summarize phylogenetic relationships of genomes in visually appealing and informative figures. Dekapentagonal maps depict phylogenetic information for orthologous genes present in five genomes, and provide a pre-screen for putatively horizontally transferred genes. If the majority of individual gene phylogenies are unresolved, bipartition histograms provide a means of uncovering and analyzing the plurality consensus. Analyses of genomes representing five photosynthetic bacterial phyla and of the prokaryotic contributions to the eukaryotic cell illustrate the utility of the methods.

KW - Additional Data File

KW - Chlorobium Tepidum

KW - Phylogenetic Information

KW - Probability Vector

KW - Ureaplasma Urealyticum

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JO - Genome biology

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ER -

Visualization of the phylogenetic content of five genomes using dekapentagonal maps

Abstract

Keywords

ASJC Scopus subject areas

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