Visualization of the phylogenetic content of five genomes using dekapentagonal maps.

Olga Zhaxybayeva, Lutz Hamel, Jason Raymond, J. Peter Gogarten

Research output: Contribution to journalArticle

16 Citations (Scopus)

Abstract

The methods presented here summarize phylogenetic relationships of genomes in visually appealing and informative figures. Dekapentagonal maps depict phylogenetic information for orthologous genes present in five genomes, and provide a pre-screen for putatively horizontally transferred genes. If the majority of individual gene phylogenies are unresolved, bipartition histograms provide a means of uncovering and analyzing the plurality consensus. Analyses of genomes representing five photosynthetic bacterial phyla and of the prokaryotic contributions to the eukaryotic cell illustrate the utility of the methods.

Original languageEnglish (US)
JournalGenome Biology
Volume5
Issue number3
StatePublished - 2004
Externally publishedYes

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visualization
genome
Genome
phylogenetics
gene
phylogeny
Genes
genes
Eukaryotic Cells
Phylogeny
histogram
eukaryotic cells
methodology
method

ASJC Scopus subject areas

  • Genetics

Cite this

Zhaxybayeva, O., Hamel, L., Raymond, J., & Gogarten, J. P. (2004). Visualization of the phylogenetic content of five genomes using dekapentagonal maps. Genome Biology, 5(3).

Visualization of the phylogenetic content of five genomes using dekapentagonal maps. / Zhaxybayeva, Olga; Hamel, Lutz; Raymond, Jason; Gogarten, J. Peter.

In: Genome Biology, Vol. 5, No. 3, 2004.

Research output: Contribution to journalArticle

Zhaxybayeva, O, Hamel, L, Raymond, J & Gogarten, JP 2004, 'Visualization of the phylogenetic content of five genomes using dekapentagonal maps.', Genome Biology, vol. 5, no. 3.
Zhaxybayeva, Olga ; Hamel, Lutz ; Raymond, Jason ; Gogarten, J. Peter. / Visualization of the phylogenetic content of five genomes using dekapentagonal maps. In: Genome Biology. 2004 ; Vol. 5, No. 3.
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