Ngila: Global pairwise alignments with logarithmic and affine gap costs

Reed A. Cartwright

doi:10.1093/bioinformatics/btm095

Ngila: Global pairwise alignments with logarithmic and affine gap costs

Reed A. Cartwright

Research output: Contribution to journal › Article › peer-review

14 Scopus citations

Abstract

Summary: Ngila is an application that will find the best alignment of a pair of sequences using log-affine gap costs, which are the most biologically realistic gap costs.

Original language	English (US)
Pages (from-to)	1427-1428
Number of pages	2
Journal	Bioinformatics
Volume	23
Issue number	11
DOIs	https://doi.org/10.1093/bioinformatics/btm095
State	Published - Jun 2007
Externally published	Yes

ASJC Scopus subject areas

Statistics and Probability
Biochemistry
Molecular Biology
Computer Science Applications
Computational Theory and Mathematics
Computational Mathematics

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10.1093/bioinformatics/btm095

Cite this

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title = "Ngila: Global pairwise alignments with logarithmic and affine gap costs",

abstract = "Summary: Ngila is an application that will find the best alignment of a pair of sequences using log-affine gap costs, which are the most biologically realistic gap costs.",

author = "Cartwright, {Reed A.}",

note = "Funding Information: This research was funded by an NSF Predoctoral Fellowship and N.I.H. grant GM070806. The author would like to thank Ben Redelings, Jeff Thorne and two anonymous reviewers for their helpful suggestions.",

year = "2007",

month = jun,

doi = "10.1093/bioinformatics/btm095",

language = "English (US)",

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T2 - Global pairwise alignments with logarithmic and affine gap costs

AU - Cartwright, Reed A.

N1 - Funding Information: This research was funded by an NSF Predoctoral Fellowship and N.I.H. grant GM070806. The author would like to thank Ben Redelings, Jeff Thorne and two anonymous reviewers for their helpful suggestions.

PY - 2007/6

Y1 - 2007/6

N2 - Summary: Ngila is an application that will find the best alignment of a pair of sequences using log-affine gap costs, which are the most biologically realistic gap costs.

AB - Summary: Ngila is an application that will find the best alignment of a pair of sequences using log-affine gap costs, which are the most biologically realistic gap costs.

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U2 - 10.1093/bioinformatics/btm095

DO - 10.1093/bioinformatics/btm095

M3 - Article

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SP - 1427

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JO - Bioinformatics

JF - Bioinformatics

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ER -

Ngila: Global pairwise alignments with logarithmic and affine gap costs

Abstract

ASJC Scopus subject areas

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