Long-range heterogeneity at the 3′ ends of human mRNAs

Christian Iseli, Brian J. Stevenson, Sandro J. De Souza, Helena B. Samaia, Anamaria A. Camargo, Kenneth H. Buetow, Robert L. Strausberg, Andrew J.G. Simpson, Philipp Bucher, C. Victor Jongeneel

Research output: Contribution to journalArticle

62 Scopus citations

Abstract

The publication of a draft of the human genome and of large collections of transcribed sequences has made it possible to study the complex relationship between the transcriptome and the genome. In the work presented here, we have focused on mapping mRNA 3′ ends onto the genome by use of the raw data generated by the expressed sequence tag (EST) sequencing projects. We find that at least half of the human genes encode multiple transcripts whose polyadenylation is driven by multiple signals. The corresponding transcript 3′ ends are spread over distances in the kilobase range. This finding has profound implications for our understanding of gene expression regulation and of the diversity of human transcripts, for the design of cDNA microarray probes, and for the interpretation of gene expression profiling experiments.

Original languageEnglish (US)
Pages (from-to)1068-1074
Number of pages7
JournalGenome research
Volume12
Issue number7
DOIs
StatePublished - Jul 30 2002
Externally publishedYes

ASJC Scopus subject areas

  • Genetics
  • Genetics(clinical)

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    Iseli, C., Stevenson, B. J., De Souza, S. J., Samaia, H. B., Camargo, A. A., Buetow, K. H., Strausberg, R. L., Simpson, A. J. G., Bucher, P., & Victor Jongeneel, C. (2002). Long-range heterogeneity at the 3′ ends of human mRNAs. Genome research, 12(7), 1068-1074. https://doi.org/10.1101/gr.62002. Article published online before print in June 2002