Evolutionary relationships of eukaryotic kingdoms

Sudhir Kumar, Andrey Rzhetsky

Research output: Contribution to journalArticle

121 Citations (Scopus)

Abstract

The evolutionary relationships of four eukaryotic kingdoms-Animalia, Plantae, Fungi, and Protista-remain unclear. In particular, statistical support for the closeness of animals to fungi rather than to plants is lacking, and a preferred branching order of these and other eukaryotic lineages is still controversial even though molecular sequences from diverse eukaryotic taxa have been analyzed. We report a statistical analysis of 214 sequences of nuclear small-subunit ribosomal RNA (srRNA) gene undertaken to clarify these evolutionary relationships. We have considered the variability of substitution rates and the nonindependence of nucleotide substitution across sites in the srRNA gene in testing alternative hypotheses regarding the branching patterns of eukaryote phylogeny. We find that the rates of evolution among sites in the srRNA sequences vary substantially and are approximately gamma distributed with size and shape parameter equal to 0.76. Our results suggest that (1) the animals and true fungi are indeed closer to each other than to any other 'crown' group in the eukaryote tree, (2) red algae are the closest relatives of animals, true fungi, and green plants, and (3) the heterokonts and alveolates probably evolved prior to the divergence of red algae and animal-fungus-green-plant lineages. Furthermore, our analyses indicate that the branching order of the eukaryotic lineages that diverged prior to the evolution of alveolates may be generally difficult to resolve with the srRNA sequence data.

Original languageEnglish (US)
Pages (from-to)183-193
Number of pages11
JournalJournal of Molecular Evolution
Volume42
Issue number2
DOIs
StatePublished - 1996
Externally publishedYes

Fingerprint

Fungi
Ribosomal RNA
fungus
RNA
Animals
fungi
ribosomal RNA
Viridiplantae
Rhodophyta
branching
animal
red alga
eukaryote
Algae
Eukaryota
rRNA Genes
eukaryotic cells
animals
Stramenopiles
substitution

Keywords

  • Alveolates
  • Animals
  • Fungi
  • Heterokonts
  • Phylogeny
  • Plants
  • Small-subunit ribosomal RNA
  • Stramenopiles

ASJC Scopus subject areas

  • Genetics
  • Biochemistry
  • Biochemistry, Genetics and Molecular Biology(all)
  • Genetics(clinical)
  • Ecology, Evolution, Behavior and Systematics
  • Molecular Biology
  • Agricultural and Biological Sciences(all)
  • Agricultural and Biological Sciences (miscellaneous)

Cite this

Evolutionary relationships of eukaryotic kingdoms. / Kumar, Sudhir; Rzhetsky, Andrey.

In: Journal of Molecular Evolution, Vol. 42, No. 2, 1996, p. 183-193.

Research output: Contribution to journalArticle

Kumar, Sudhir ; Rzhetsky, Andrey. / Evolutionary relationships of eukaryotic kingdoms. In: Journal of Molecular Evolution. 1996 ; Vol. 42, No. 2. pp. 183-193.
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