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Research Output 2006 2019

2019

A model for meme popularity growth in social networking systems based on biological principle and human interest dynamics

Wang, L. Z., Zhao, Z. D., Jiang, J., Guo, B. H., Wang, X., Huang, Z. G. & Lai, Y-C., Feb 1 2019, In : Chaos. 29, 2, 023136.

Research output: Contribution to journalArticle

Social Networking
Growth Model
Distinct
Social Behavior
Model
2018
1 Citation (Scopus)

Design of Adjacent Transcriptional Regions to Tune Gene Expression and Facilitate Circuit Construction

Wu, F., Zhang, Q. & Wang, X., Feb 28 2018, In : Cell Systems. 6, 2, p. 206-215.e6

Research output: Contribution to journalArticle

Gene Regulatory Networks
Synthetic Genes
Gene Expression
Base Composition
Operon
2017
2 Citations (Scopus)

Collaborations of China with the world in Synbio

Yuan, Y., Wu, J. & Wang, X., Mar 1 2017, In : Frontiers of Chemical Science and Engineering. 11, 1

Research output: Contribution to journalEditorial

1 Citation (Scopus)

Control of synthetic gene networks and its applications

Menn, D. J., Su, R. Q. & Wang, X., Jun 1 2017, In : Quantitative Biology. 5, 2, p. 124-135 12 p.

Research output: Contribution to journalReview article

Synthetic Genes
Gene Networks
Gene Regulatory Networks
Gene Regulatory Network
Genes
19 Citations (Scopus)

Engineering of a synthetic quadrastable gene network to approach Waddington landscape and cell fate determination

Wu, F., Su, R. Q., Lai, Y-C. & Wang, X., Apr 11 2017, In : eLife. 6, e23702.

Research output: Contribution to journalArticle

Synthetic Genes
Gene Regulatory Networks
Genes
Decision making
Chemical activation

Genome reprogramming for synthetic biology

Standage-Beier, K. & Wang, X., Mar 1 2017, In : Frontiers of Chemical Science and Engineering. 11, 1, p. 37-45 9 p.

Research output: Contribution to journalReview article

Genes
DNA sequences
Clustered Regularly Interspaced Short Palindromic Repeats
Bacteriophages
Biotechnology

High accuracy base calls in nanopore sequencing

Faucon, P., Trevino, R., Balachandran, P., Standage-Beier, K. & Wang, X., Jun 22 2017, Proceedings of 2017 6th International Conference on Bioinformatics and Biomedical Science, ICBBS 2017. Association for Computing Machinery, Vol. Part F130950. p. 12-16 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Nanopores
DNA
Unsupervised learning
2016
30 Citations (Scopus)

A geometrical approach to control and controllability of nonlinear dynamical networks

Wang, L. Z., Su, R. Q., Huang, Z. G., Wang, X., Wang, W. X., Grebogi, C. & Lai, Y-C., Apr 14 2016, In : Nature Communications. 7, 11323.

Research output: Contribution to journalArticle

Nonlinear Dynamics
Gene Regulatory Networks
controllability
Controllability
Noise
8 Citations (Scopus)

Build to understand: synthetic approaches to biology

Wang, L. Z., Wu, F., Flores, K., Lai, Y-C. & Wang, X., Apr 18 2016, In : Integrative biology : quantitative biosciences from nano to macro. 8, 4, p. 394-408 15 p.

Research output: Contribution to journalReview article

Gene Regulatory Networks
Synthetic Biology
Synthetic Genes
Networks (circuits)
Genes
8 Citations (Scopus)

Data-based reconstruction of complex geospatial networks, nodal positioning and detection of hidden nodes

Su, R. Q., Wang, W. X., Wang, X. & Lai, Y-C., Jan 1 2016, In : Royal Society Open Science. 3, 1, 150577.

Research output: Contribution to journalArticle

Complex networks
Time series
Time delay
Topology
5 Citations (Scopus)

Polyclonal antibody production for membrane proteins via genetic immunization

Hansen, D., Robida, M. D., Craciunescu, F. M., Loskutov, A. V., Dörner, K., Rodenberry, J. C., Wang, X., Olson, T. L., Patel, H., Fromme, P. & Sykes, K. F., Feb 24 2016, In : Scientific Reports. 6, 21925.

Research output: Contribution to journalArticle

Antibody Formation
Immunization
Membrane Proteins
Antibodies
Francisella tularensis
2015
5 Citations (Scopus)

Applications of synthetic gene networks

Wu, F. & Wang, X., Sep 1 2015, In : Science Progress. 98, 3, p. 244-252 9 p.

Research output: Contribution to journalArticle

Synthetic Genes
Gene Regulatory Networks
Synthetic Biology
Biosensing Techniques
Therapeutics
28 Citations (Scopus)

Targeted Large-Scale Deletion of Bacterial Genomes Using CRISPR-Nickases

Standage-Beier, K., Zhang, Q. & Wang, X., Nov 20 2015, In : ACS Synthetic Biology. 4, 11, p. 1217-1225 9 p.

Research output: Contribution to journalArticle

Clustered Regularly Interspaced Short Palindromic Repeats
Bacterial Genomes
Genes
Deoxyribonuclease I
Genome
Clustered Regularly Interspaced Short Palindromic Repeats
Bacterial Genomes
Biotechnology
Genome
Synthetic Biology
2014
20 Citations (Scopus)

Gene networks of fully connected triads with complete auto-activation enable multistability and stepwise stochastic transitions

Faucon, P. C., Pardee, K., Kumar, R. M., Li, H., Loh, Y. H. & Wang, X., Jul 24 2014, In : PLoS One. 9, 7, e102873.

Research output: Contribution to journalArticle

Gene Regulatory Networks
automobiles
topology
Genes
Chemical activation
6 Citations (Scopus)

Identifying chaotic Fitzhugh-Nagumo neurons using compressive sensing

Su, R. Q., Lai, Y-C. & Wang, X., 2014, In : Entropy. 16, 7, p. 3889-3902 14 p.

Research output: Contribution to journalArticle

neurons
dynamical systems
time series analysis
embedding
set theory
36 Citations (Scopus)

Quorum-sensing crosstalk-driven synthetic circuits: From Unimodality to trimodality

Wu, F., Menn, D. J. & Wang, X., Dec 18 2014, In : Chemistry and Biology. 21, 12, p. 1629-1638 10 p.

Research output: Contribution to journalArticle

Quorum Sensing
Crosstalk
Networks (circuits)
Synthetic Biology
Biotechnology
21 Citations (Scopus)

Uncovering hidden nodes in complex networks in the presence of noise

Su, R. Q., Lai, Y-C., Wang, X. & Do, Y., Feb 3 2014, In : Scientific Reports. 4, 3944.

Research output: Contribution to journalArticle

games
background noise
complex systems
predictions
2013
50 Citations (Scopus)

Engineering of regulated stochastic cell fate determination

Wu, M., Su, R. Q., Li, X., Ellis, T., Lai, Y-C. & Wang, X., Jun 25 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 26, p. 10610-10615 6 p.

Research output: Contribution to journalArticle

Gene Regulatory Networks
Synthetic Genes
Flow Cytometry
Synthetic Biology
Gene Expression
2011
27 Citations (Scopus)

Noise-aided computation within a synthetic gene network through morphable and robust logic gates

Dari, A., Kia, B., Wang, X., Bulsara, A. R. & Ditto, W., Apr 11 2011, In : Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 83, 4, 041909.

Research output: Contribution to journalArticle

Gene Networks
genes
logic
Logic
Synthetic Biology
1 Citation (Scopus)

Reprogrammable biological logic gate that exploits noise

Dari, A., Bulsara, A. R., Ditto, W. L. & Wang, X., 2011, 2011 IEEE Biomedical Circuits and Systems Conference, BioCAS 2011. p. 337-340 4 p. 6107796

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Logic gates
Genes
Bacteriophages
Yeast
Switches
2010
89 Citations (Scopus)

Tuning and controlling gene expression noise in synthetic gene networks

Murphy, K. F., Adams, R. M., Wang, X., Balázsi, G. & Collins, J. J., Mar 8 2010, In : Nucleic Acids Research. 38, 8, p. 2712-2726 15 p., gkq091.

Research output: Contribution to journalArticle

Synthetic Genes
Gene Regulatory Networks
Noise
Gene Expression
TATA Box
2009
322 Citations (Scopus)

Diversity-based, model-guided construction of synthetic gene networks with predicted functions

Ellis, T., Wang, X. & Collins, J. J., May 2009, In : Nature Biotechnology. 27, 5, p. 465-471 7 p.

Research output: Contribution to journalArticle

Synthetic Genes
Gene Regulatory Networks
Genes
Yeast
Libraries
350 Citations (Scopus)

Synthetic gene networks that count

Friedland, A. E., Lu, T. K., Wang, X., Shi, D., Church, G. & Collins, J. J., May 29 2009, In : Science. 324, 5931, p. 1199-1202 4 p.

Research output: Contribution to journalArticle

Synthetic Genes
Gene Regulatory Networks
Equipment and Supplies
Recombinases
Aptitude
2008
1 Citation (Scopus)

Gene Regulation: Hacking the Network on a Sugar High

Ellis, T., Wang, X. & Collins, J. J., Apr 11 2008, In : Molecular Cell. 30, 1, p. 1-2 2 p.

Research output: Contribution to journalArticle

Gene Regulatory Networks
Escherichia coli
Genes
21 Citations (Scopus)

Mathematical analysis and quantification of fluorescent proteins as transcriptional reporters

Wang, X., Errede, B. & Elston, T. C., Mar 15 2008, In : Biophysical Journal. 94, 6, p. 2017-2026 10 p.

Research output: Contribution to journalArticle

Half-Life
Proteins
Fluorescence
Theoretical Models
2007
17 Citations (Scopus)

A pathway and genetic factors contributing to elevated gene expression noise in stationary phase

Guido, N. J., Lee, P., Wang, X., Elston, T. C. & Collins, J. J., Dec 1 2007, In : Biophysical Journal. 93, 11

Research output: Contribution to journalArticle

Noise
Gene Expression
Ribosomes
Escherichia coli
Messenger RNA
39 Citations (Scopus)

Variable-free exploration of stochastic models: A gene regulatory network example

Erban, R., Frewen, T. A., Wang, X., Elston, T. C., Coifman, R., Nadler, B. & Kevrekidis, I. G., 2007, In : Journal of Chemical Physics. 126, 15, 155103.

Research output: Contribution to journalArticle

Stochastic models
genes
Genes
translating
data simulation
2006
250 Citations (Scopus)

A bottom-up approach to gene regulation

Guido, N. J., Wang, X., Adalsteinsson, D., McMillen, D., Hasty, J., Cantor, C. R., Elston, T. C. & Collins, J. J., Feb 16 2006, In : Nature. 439, 7078, p. 856-860 5 p.

Research output: Contribution to journalArticle

Synthetic Genes
Gene Regulatory Networks
Cell Division
Genes
Noise
64 Citations (Scopus)

Bistability, stochasticity, and oscillations in the mitogen-activated protein kinase cascade

Wang, X., Hao, N., Dohlman, H. G. & Elston, T. C., Mar 2006, In : Biophysical Journal. 90, 6, p. 1961-1978 18 p.

Research output: Contribution to journalArticle

Mitogen-Activated Protein Kinases
Proteins
Pheromones
Genetic Models
Yeasts