Kenro Kusumi

Assoc Dean (ACD) & Professor

  • 4858 Citations
  • 31 h-Index
1991 …2020

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2020

Discovery of a New TLR Gene and Gene Expansion Event through Improved Desert Tortoise Genome Assembly with Chromosome-Scale Scaffolds

Dolby, G. A., Morales, M., Webster, T. H., Denardo, D. F., Wilson, M. A., Kusumi, K. & Piontkivska, H., Feb 8 2020, In : Genome biology and evolution. 12, 2, p. 3917-3925 9 p.

Research output: Contribution to journalArticle

Open Access

Virus discovery in desert tortoise fecal samples: Novel circular single-stranded DNA viruses

Orton, J. P., Morales, M., Fontenele, R. S., Schmidlin, K., Kraberger, S., Leavitt, D. J., Webster, T. H., Wilson, M. A., Kusumi, K., Dolby, G. A. & Varsani, A., Jan 1 2020, In : Viruses. 12, 2, v12020143.

Research output: Contribution to journalArticle

Open Access
2018

Anolis carolinensis as a model to understand the molecular and cellular basis of foveal development

Sannan, N. S., Shan, X., Gregory-Evans, K., Kusumi, K. & Gregory-Evans, C. Y., Aug 1 2018, In : Experimental Eye Research. 173, p. 138-147 10 p.

Research output: Contribution to journalArticle

1 Scopus citations

Comparative Genomics Reveals Accelerated Evolution in Conserved Pathways during the Diversification of Anole Lizards

Tollis, M., Hutchins, E. D., Stapley, J., Rupp, S. M., Eckalbar, W. L., Maayan, I., Lasku, E., Infante, C. R., Dennis, S. R., Robertson, J. A., May, C. M., Crusoe, M. R., Bermingham, E., Denardo, D., Hsieh, S. T. T., Kulathinal, R. J., McMillan, W. O., Menke, D. B., Pratt, S., Rawls, J. & 5 others, Sanjur, O., Wilson-Rawls, N., Wilson Sayres, M., Fisher, R. E. & Kusumi, K., Feb 1 2018, In : Genome biology and evolution. 10, 2, p. 489-506 18 p.

Research output: Contribution to journalArticle

7 Scopus citations

Developmental and adult-specific processes contribute to de novo neuromuscular regeneration in the lizard tail

Tokuyama, M. A., Xu, C., Fisher, R. E., Wilson-Rawls, N., Kusumi, K. & Newbern, J., Jan 15 2018, In : Developmental Biology. 433, 2, p. 287-296 10 p.

Research output: Contribution to journalArticle

5 Scopus citations

Identification of satellite cells from anole lizard skeletal muscle and demonstration of expanded musculoskeletal potential

Palade, J., Djordjevic, D., Hutchins, E. D., George, R. M., Cornelius, J. A., Rawls, J., Ho, J. W. K., Kusumi, K. & Wilson-Rawls, N., Jan 15 2018, In : Developmental Biology. 433, 2, p. 344-356 13 p.

Research output: Contribution to journalArticle

3 Scopus citations

Summary of the first inaugural joint meeting of the International Consortium for scoliosis genetics and the International Consortium for vertebral anomalies and scoliosis, March 16–18, 2017, Dallas, Texas

Giampietro, P. F., Pourquie, O., Raggio, C., Ikegawa, S., Turnpenny, P. D., Gray, R., Dunwoodie, S. L., Gurnett, C. A., Alman, B., Cheung, K., Kusumi, K., Hadley-Miller, N. & Wise, C. A., Jan 1 2018, In : American Journal of Medical Genetics, Part A. 176, 1, p. 253-256 4 p.

Research output: Contribution to journalArticle

5 Scopus citations
2017

Evolution of dosage compensation in Anolis carolinensis, a reptile with XX/XY chromosomal sex determination

Rupp, S. M., Webster, T. H., Olney, K. C., Hutchins, E. D., Kusumi, K. & Wilson Sayres, M., Jan 1 2017, In : Genome biology and evolution. 9, 1, p. 231-240 10 p.

Research output: Contribution to journalArticle

10 Scopus citations

The Agassiz's desert tortoise genome provides a resource for the conservation of a threatened species

Tollis, M., Denardo, D., Cornelius, J. A., Dolby, G. A., Edwards, T., Henen, B. T., Karl, A. E., Murphy, R. W. & Kusumi, K., May 2017, In : PloS one. 12, 5, e0177708.

Research output: Contribution to journalArticle

10 Scopus citations
2016

Assessing models of speciation under different biogeographic scenarios; an empirical study using multi-locus and RNA-seq analyses

Edwards, T., Tollis, M., Hsieh, P., Gutenkunst, R. N., Liu, Z., Kusumi, K., Culver, M. & Murphy, R. W., Jan 1 2016, In : Ecology and Evolution. 6, 2, p. 379-396 18 p.

Research output: Contribution to journalArticle

4 Scopus citations

Differential expression of conserved and novel microRNAs during tail regeneration in the lizard Anolis carolinensis

Hutchins, E. D., Eckalbar, W. L., Wolter, J. M., Mangone, M. & Kusumi, K., May 5 2016, In : BMC Genomics. 17, 1, 339.

Research output: Contribution to journalArticle

15 Scopus citations

XGSA: A statistical method for cross-species gene set analysis

Djordjevic, D., Kusumi, K. & Ho, J. W. K., Sep 1 2016, In : Bioinformatics. 32, 17, p. i620-i628

Research output: Contribution to journalArticle

7 Scopus citations
2014

Reptile genomes open the frontier for comparative analysis of amniote development and regeneration

Tollis, M., Hutchins, E. D. & Kusumi, K., Jul 8 2014, In : International Journal of Developmental Biology. 58, 10-12, p. 863-871 9 p.

Research output: Contribution to journalArticle

8 Scopus citations

Transcriptomic analysis of tail regeneration in the lizard Anolis carolinensis reveals activation of conserved vertebrate developmental and repair mechanisms

Hutchins, E. D., Markov, G. J., Eckalbar, W. L., George, R. M., King, J. M., Tokuyama, M. A., Geiger, L. A., Emmert, N., Ammar, M. J., Allen, A. N., Siniard, A. L., Corneveaux, J. J., Fisher, R. E., Wade, J., DeNardo, D. F., Rawls, J. A., Huentelman, M. J., Wilson-Rawls, J. & Kusumi, K., 2014, In : PLoS One. 9, 8, p. e105004

Research output: Contribution to journalArticle

63 Scopus citations
2013

Genome reannotation of the lizard Anolis carolinensis based on 14 adult and embryonic deep transcriptomes

Eckalbar, W. L., Hutchins, E. D., Markov, G. J., Allen, A. N., Corneveaux, J. J., Lindblad-Toh, K., Di Palma, F., Alföldi, J., Huentelman, M. J. & Kusumi, K., Jan 23 2013, In : BMC Genomics. 14, 1, 49.

Research output: Contribution to journalArticle

42 Scopus citations
2012

A Histological Comparison of the Original and Regenerated Tail in the Green Anole, Anolis carolinensis

Fisher, R. E., Geiger, L. A., Stroik, L. K., Hutchins, E. D., George, R. M., Denardo, D. F., Kusumi, K., Rawls, J. A. & Wilson-Rawls, J., Oct 1 2012, In : Anatomical Record. 295, 10, p. 1609-1619 11 p.

Research output: Contribution to journalArticle

59 Scopus citations

A mechanism for gene-environment interaction in the etiology of congenital scoliosis

Sparrow, D. B., Chapman, G., Smith, A. J., Mattar, M. Z., Major, J. A., O'Reilly, V. C., Saga, Y., Zackai, E. H., Dormans, J. P., Alman, B. A., McGregor, L., Kageyama, R., Kusumi, K. & Dunwoodie, S. L., Apr 13 2012, In : Cell. 149, 2, p. 295-306 12 p.

Research output: Contribution to journalArticle

116 Scopus citations

Mutations in the Notch pathway alter the patterning of multifidus

Fisher, R. E., Smith, H. F., Kusumi, K., Tassone, E. E., Rawls, A. & Wilson-Rawls, J., Jan 1 2012, In : Anatomical Record. 295, 1, p. 32-39 8 p.

Research output: Contribution to journalArticle

4 Scopus citations

Somitogenesis in the anole lizard and alligator reveals evolutionary convergence and divergence in the amniote segmentation clock

Eckalbar, W. L., Lasku, E., Infante, C. R., Elsey, R. M., Markov, G. J., Allen, A. N., Corneveaux, J. J., Losos, J. B., DeNardo, D. F., Huentelman, M. J., Wilson-Rawls, J., Rawls, A. & Kusumi, K., Mar 1 2012, In : Developmental Biology. 363, 1, p. 308-319 12 p.

Research output: Contribution to journalArticle

34 Scopus citations

The Gross Anatomy of the Original and Regenerated Tail in the Green Anole (Anolis carolinensis)

Ritzman, T. B., Stroik, L. K., Julik, E., Hutchins, E. D., Lasku, E., Denardo, D. F., Wilson-Rawls, J., Rawls, J. A., Kusumi, K. & Fisher, R. E., Oct 1 2012, In : Anatomical Record. 295, 10, p. 1596-1608 13 p.

Research output: Contribution to journalArticle

32 Scopus citations
2010

Preface

Kusumi, K. & Dunwoodie, S. L., 2010, In : Unknown Journal. p. vii-viii

Research output: Contribution to journalArticle

2009

Cyclical expression of the Notch/Wnt regulator Nrarp requires modulation by Dll3 in somitogenesis

Sewell, W., Sparrow, D. B., Smith, A. J., Gonzalez, D. M., Rappaport, E. F., Dunwoodie, S. L. & Kusumi, K., May 15 2009, In : Developmental Biology. 329, 2, p. 400-409 10 p.

Research output: Contribution to journalArticle

30 Scopus citations

Progress in the understanding of the genetic etiology of vertebral segmentation disorders in humans

Giampietro, P. F., Dunwoodie, S. L., Kusumi, K., Pourquié, O., Tassy, O., Offiah, A. C., Cornier, A. S., Alman, B. A., Blank, R. D., Raggio, C. L., Glurich, I. & Turnpenny, P. D., Jan 2009, In : Annals of the New York Academy of Sciences. 1151, p. 38-67 30 p.

Research output: Contribution to journalArticle

37 Scopus citations
2008

Bile duct proliferation in Jag1/fringe heterozygous mice identifies candidate modifiers of the Alagille syndrome hepatic phenotype

Ryan, M. J., Bales, C., Nelson, A., Gonzalez, D. M., Underkoffler, L., Segalov, M., Wilson-Rawls, N., Cole, S. E., Moran, J. L., Russo, P., Spinner, N. B., Kusumi, K. & Loomes, K. M., Dec 1 2008, In : Hepatology. 48, 6, p. 1989-1997 9 p.

Research output: Contribution to journalArticle

46 Scopus citations

Mouse mutations disrupting somitogenesis and vertebral patterning

Kusumi, K., Sewell, W. & O'Brien, M. L., 2008, In : Advances in Experimental Medicine and Biology. 638, p. 140-163 24 p.

Research output: Contribution to journalArticle

1 Scopus citations
2007

Dll3 and Notch1 genetic interactions model axial segmental and craniofacial malformations of human birth defects

Loomes, K. M., Stevens, S. A., O'Brien, M. L., Gonzalez, D. M., Ryan, M. J., Segalov, M., Dormans, N. J., Mimoto, M. S., Gibson, J. D., Sewell, W., Schaffer, A. A., Nah, H. D., Rappaport, E. F., Pratt, S., Dunwoodie, S. L. & Kusumi, K., Oct 1 2007, In : Developmental Dynamics. 236, 10, p. 2943-2951 9 p.

Research output: Contribution to journalArticle

29 Scopus citations

Formation errors of the vertebral column

Kusumi, K. & Turnpenny, P. D., Feb 1 2007, In : Journal of Bone and Joint Surgery - Series A. 89, SUPPL. 1, p. 64-71 8 p.

Research output: Contribution to journalArticle

23 Scopus citations

Identification of cord blood-derived mesenchymal stem/stromal cell populations with distinct growth kinetics, differentiation potentials, and gene expression profiles

Markov, V., Kusumi, K., Tadesse, M. G., William, D. A., Hall, D. M., Lounev, V., Carlton, A., Leonard, J., Cohen, R. I., Rappaport, E. F. & Saitta, B., Feb 1 2007, In : Stem Cells and Development. 16, 1, p. 53-73 21 p.

Research output: Contribution to journalArticle

90 Scopus citations

Identification of oscillatory genes in somitogenesis from functional genomic analysis of a human mesenchymal stem cell model

William, D. A., Saitta, B., Gibson, J. D., Traas, J., Markov, V., Gonzalez, D. M., Sewell, W., Anderson, D. M., Pratt, S., Rappaport, E. F. & Kusumi, K., May 1 2007, In : Developmental Biology. 305, 1, p. 172-186 15 p.

Research output: Contribution to journalArticle

48 Scopus citations
2006

Mutation of the LUNATIC FRINGE gene in humans causes spondylocostal dysostosis with a severe vertebral phenotype

Sparrow, D. B., Chapman, G., Wouters, M. A., Whittock, N. V., Ellard, S., Fatkin, D., Turnpenny, P. D., Kusumi, K., Sillence, D. & Dunwoodie, S. L., Jan 2006, In : American Journal of Human Genetics. 78, 1, p. 28-37 10 p.

Research output: Contribution to journalArticle

156 Scopus citations
2005

Molecular analysis of congenital scoliosis: A candidate gene approach

Maisenbacher, M. K., Han, J. S., O'Brien, M. L., Tracy, M. R., Erol, B., Schaffer, A. A., Dormans, J. P., Zackai, E. H. & Kusumi, K., Apr 1 2005, In : Human Genetics. 116, 5, p. 416-419 4 p.

Research output: Contribution to journalArticle

47 Scopus citations
2004

Congenital scoliosis and vertebral malformations: Characterization of segmental defects for genetic analysis

Erol, B., Tracy, M. R., Dormans, J. P., Zackai, E. H., Maisenbacher, M. K., O'Brien, M. L., Turnpenny, P. D. & Kusumi, K., Jan 1 2004, In : Journal of Pediatric Orthopaedics. 24, 6, p. 674-682 9 p.

Research output: Contribution to journalArticle

49 Scopus citations

Dll3 pudgy mutation differentially disrupts dynamic expression of somite genes

Kusumi, K., Mimoto, M. S., Covello, K. L., Beddington, R. S. P., Krumlauf, R. & Dunwoodie, S. L., Jun 1 2004, In : Genesis. 39, 2, p. 115-121 7 p.

Research output: Contribution to journalArticle

35 Scopus citations

Klippel-Feil syndrome: Clinical features and current understanding of etiology

Tracy, M. R., Dormans, J. P. & Kusumi, K., Jul 2004, In : Clinical Orthopaedics and Related Research. 424, p. 183-190 8 p.

Research output: Contribution to journalArticle

162 Scopus citations
2003

Novel mutations in DLL3, a somitogenesis gene encoding a ligand for the Notch signalling pathway, cause a consistent pattern of abnormal vertebral segmentation in spondylocostal dysostosis

Turnpenny, P. D., Whittock, N., Duncan, J., Dunwoodie, S., Kusumi, K. & Ellard, S., May 1 2003, In : Journal of Medical Genetics. 40, 5, p. 333-339 7 p.

Research output: Contribution to journalArticle

Open Access
93 Scopus citations
2002

Diverse requirements for Notch signalling in mammals

Sparrow, D. B., Clements, M., Withington, S. L., Scott, A. N., Novotny, J., Sillence, D., Kusumi, K., Beddington, R. S. P. & Dunwoodie, S. L., Dec 1 2002, In : International Journal of Developmental Biology. 46, 4 SPEC., p. 365-374 10 p.

Research output: Contribution to journalArticle

25 Scopus citations

Hereditary multiple exostoses: One center's experience and review of etiology

Pierz, K. A., Stieber, J. R., Kusumi, K. & Dormans, J. P., Jan 1 2002, In : Clinical Orthopaedics and Related Research. 401, p. 49-59 11 p.

Research output: Contribution to journalArticle

59 Scopus citations
2001

Ducky mouse phenotype of epilepsy and ataxia is associated with mutations in the Cacna2d2 gene and decreased calcium channel current in cerebellar Purkinje cells

Barclay, J., Balaguero, N., Mione, M., Ackerman, S. L., Letts, V. A., Brodbeck, J., Canti, C., Meir, A., Page, K. M., Kusumi, K., Perez-Reyes, E., Lander, E. S., Frankel, W. N., Gardiner, R. M., Dolphin, A. C. & Rees, M., Aug 15 2001, In : Journal of Neuroscience. 21, 16, p. 6095-6104 10 p.

Research output: Contribution to journalArticle

210 Scopus citations

Dynamic expression patterns of the pudgy/spondylocostal dysostosis gene Dll3 in the developing nervous system

Kusumi, K., Dunwoodie, S. L. & Krumlauf, R., Jan 1 2001, In : Mechanisms of Development. 100, 1, p. 141-144 4 p.

Research output: Contribution to journalArticle

19 Scopus citations

When body segmentation goes wrong

Pourquié, O. & Kusumi, K., Dec 1 2001, In : Clinical Genetics. 60, 6, p. 409-416 8 p.

Research output: Contribution to journalArticle

53 Scopus citations
2000

Mutations in the human Delta homologue, DLL3, cause axial skeletal defects in spondylocostal dysostosis

Bulman, M. P., Kusumi, K., Frayling, T. M., McKeown, C., Garrett, C., Lander, E. S., Krumlauf, R., Hattersley, A. T., Ellard, S. & Turnpenny, P. D., Apr 1 2000, In : Nature Genetics. 24, 4, p. 438-441 4 p.

Research output: Contribution to journalArticle

286 Scopus citations
1999

The neuronal ceroid lipofuscinoses in human EPMR and mnd mutant mice are associated with mutations in CLN8

Ranta, S., Zhang, Y., Ross, B., Lonka, L., Takkunen, E., Messer, A., Sharp, J., Wheeler, R., Kusumi, K., Mole, S., Liu, W., Soares, M. B., Bonaldo, M. D. F., Hirvasniemi, A., De La Chapelle, A., Gilliam, T. C. & Lehesjoki, A. E., Oct 1 1999, In : Nature Genetics. 23, 2, p. 233-236 4 p.

Research output: Contribution to journalArticle

224 Scopus citations
1998

The mouse pudgy mutation disrupts Delta homologue DII3 and initiation of early somite boundaries

Kusumi, K., Sun, E. S., Kerrebrock, A. W., Bronson, R. T., Chi, D. C., Bulotsky, M. S., Spencer, J. B., Birren, B. W., Frankel, W. N. & Lander, E. S., Jul 15 1998, In : Nature Genetics. 19, 3, p. 274-278 5 p.

Research output: Contribution to journalArticle

236 Scopus citations
1996

Disruption of the nuclear hormone receptor RORα in staggerer mice

Hamilton, B. A., Frankel, W. N., Kerrebrock, A. W., Hawkins, T. L., FitzHugh, W., Kusumi, K., Russell, L. B., Mueller, K. L., Van Berkel, V., Birren, B. W., Kruglyak, L. & Lander, E. S., Feb 22 1996, In : Nature. 379, 6567, p. 736-739 4 p.

Research output: Contribution to journalArticle

395 Scopus citations
1994

Direct isolation of polymorphic markers linked to a trait by genetically directed representational difference analysis

Lisitsyn, N. A., Segre, J. A., Kusumi, K., Lisitsyn, N. M., Nadeau, J. H., Frankel, W. N., Wigler, M. H. & Lander, E. S., Jan 1994, In : Nature Genetics. 6, 1, p. 57-63 7 p.

Research output: Contribution to journalArticle

106 Scopus citations

The diastrophic dysplasia gene encodes a novel sulfate transporter: Positional cloning by fine-structure linkage disequilibrium mapping

Hästbacka, J., de la Chapelle, A., Mahtani, M. M., Clines, G., Reeve-Daly, M. P., Daly, M., Hamilton, B. A., Kusumi, K., Trivedi, B., Weaver, A., Coloma, A., Lovett, M., Buckler, A., Kaitila, I. & Lander, E. S., Sep 23 1994, In : Cell. 78, 6, p. 1073-1087 15 p.

Research output: Contribution to journalArticle

586 Scopus citations
1993

Construction of a large-insert yeast artificial chromosome library of the mouse genome

Kusumi, K., Smith, J. S., Segre, J. A., Koos, D. S. & Lander, E. S., Jul 1 1993, In : Mammalian Genome. 4, 7, p. 391-392 2 p.

Research output: Contribution to journalArticle

97 Scopus citations
1992

Human immunodeficiency virus type 1 envelope gene structure and diversity in vivo and after cocultivation in vitro

Kusumi, K., Conway, B., Cunningham, S., Berson, A., Evans, C., Iversen, A. K. N., Colvin, D., Gallo, M. V., Coutre, S., Shpaer, E. G., Faulkner, D. V., DeRonde, A., Volkman, S., Williams, C., Hirsch, M. S. & Mullins, J. I., Jan 1 1992, In : Journal of virology. 66, 2, p. 875-885 11 p.

Research output: Contribution to journalArticle

Open Access
120 Scopus citations
1991

Genetic mapping of a gene causing hypertension in the stroke-prone spontaneously hypertensive rat

Jacob, J. J., Lindpaintner, K., Lincoln, S. E., Kusumi, K., Bunker, R. K., Mao, Y. P., Ganten, D., Dzau, V. J. & Lander, E. S., Oct 4 1991, In : Cell. 67, 1, p. 213-224 12 p.

Research output: Contribution to journalArticle

633 Scopus citations

Immunization of chimpanzees confers protection against challenge with human immunodeficiency virus

Girard, M., Kieny, M. P., Pinter, A., Barre-Sinoussi, F., Nara, P., Kolbe, H., Kusumi, K., Chaput, A., Reinhart, T., Muchmore, E., Ronco, J., Kaczorek, M., Gomard, E., Gluckman, J. C. & Fultz, P. N., Feb 11 1991, In : Proceedings of the National Academy of Sciences of the United States of America. 88, 2, p. 542-546 5 p.

Research output: Contribution to journalArticle

Open Access
297 Scopus citations