Research Output 1870 2019

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2019
1 Citation (Scopus)

A Bayesian Nonparametric Approach to Single Molecule Förster Resonance Energy Transfer

Sgouralis, I., Madaan, S., Djutanta, F., Kha, R., Hariadi, R. & Presse, S., Jan 24 2019, In : Journal of Physical Chemistry B. 123, 3, p. 675-688 14 p.

Research output: Contribution to journalArticle

Bayes Theorem
Energy Transfer
Photons
Energy transfer
energy transfer

A broader view on jamming: from spring networks to circle packings

F. Hagh, V., Corwin, E. I., Stephenson, K. & Thorpe, M., Jan 1 2019, In : Soft Matter. 15, 15, p. 3076-3084 9 p.

Research output: Contribution to journalArticle

jamming
Jamming
Elastic moduli
Triangulation
bulk modulus

A method for single molecule tracking using a conventional single-focus confocal setup

Jazani, S., Sgouralis, I. & Presse, S., Mar 21 2019, In : Journal of Chemical Physics. 150, 11, 114108.

Research output: Contribution to journalArticle

Open Access
Molecules
spatial resolution
Sensors
Fluorescence
molecules
2 Citations (Scopus)

Autonomous dynamic control of DNA nanostructure self-assembly

Green, L. N., Subramanian, H. K. K., Mardanlou, V., Kim, J., Hariadi, R. & Franco, E., Jan 1 2019, In : Nature Chemistry.

Research output: Contribution to journalArticle

Self assembly
Nanostructures
DNA
Nucleic acids
Nanotechnology
1 Citation (Scopus)

Comparison study of temperature dependent direct/indirect bandgap emissions of Ge 1-x-y Si x Sn y and Ge 1-y Sn y grown on Ge buffered Si

Wang, B., Harris, T. R., Hogsed, M. R., Yeo, Y. K., Ryu, M. Y. & Kouvetakis, J., Mar 1 2019, In : Thin Solid Films. 673, p. 63-71 9 p.

Research output: Contribution to journalArticle

Photoluminescence
Energy gap
photoluminescence
Conduction bands
Temperature

Condensation of SiC Stardust in CO Nova Outbursts

Bose, M. & Starrfield, S., Jan 1 2019, In : Astrophysical Journal. 873, 1, 14.

Research output: Contribution to journalArticle

outburst
condensation
ejecta
meteorite
solar system
3 Citations (Scopus)

Crystal structure of misoprostol bound to the labor inducer prostaglandin E2 receptor

Audet, M., White, K. L., Breton, B., Zarzycka, B., Han, G. W., Lu, Y., Gati, C., Batyuk, A., Popov, P., Velasquez, J., Manahan, D., Hu, H., Weierstall, U., Liu, W., Shui, W., Katritch, V., Cherezov, V., Hanson, M. A. & Stevens, R. C., Jan 1 2019, In : Nature Chemical Biology. 15, 1, p. 11-17 7 p.

Research output: Contribution to journalArticle

Prostaglandin Receptors
Misoprostol
Dinoprostone
Induced Labor
Myometrium

Decay of Cosmic String Loops due to Particle Radiation

Matsunami, D., Pogosian, L., Saurabh, A. & Vachaspati, T., May 20 2019, In : Physical Review Letters. 122, 20, 201301.

Research output: Contribution to journalArticle

Open Access
strings
decay
radiation
gravitational waves
particle decay

Defects at the surface of β -Ga2O3 produced by Ar plasma exposure

Polyakov, A. Y., Lee, I. H., Smirnov, N. B., Yakimov, E. B., Shchemerov, I. V., Chernykh, A. V., Kochkova, A. I., Vasilev, A. A., Carey, P. H., Ren, F., Smith, D. & Pearton, S. J., Jun 1 2019, In : APL Materials. 7, 6, 061102.

Research output: Contribution to journalArticle

Open Access
Plasmas
Defects
Electron traps
Vapor phase epitaxy
Inductively coupled plasma

Design and operation of a windowless gas target internal to a solenoidal magnet for use with a megawatt electron beam

Lee, S., Corliss, R., Friščić, I., Alarcon, R., Aulenbacher, S., Balewski, J., Benson, S., Bernauer, J. C., Bessuille, J., Boyce, J., Coleman, J., Douglas, D., Epstein, C. S., Fisher, P., Frierson, S., Garçon, M., Grames, J., Hasell, D., Hernandez-Garcia, C., Ihloff, E. & 20 others, Johnston, R., Jordan, K., Kazimi, R., Kelsey, J., Kohl, M., Liyanage, A., McCaughan, M., Milner, R. G., Moran, P., Nazeer, J., Palumbo, D., Poelker, M., Randall, G., Steadman, S. G., Tennant, C., Tschalär, C., Vidal, C., Vogel, C., Wang, Y. & Zhang, S., Sep 21 2019, In : Nuclear Instruments and Methods in Physics Research, Section A: Accelerators, Spectrometers, Detectors and Associated Equipment. 939, p. 46-54 9 p.

Research output: Contribution to journalArticle

Magnets
Electron beams
magnets
electron beams
Recovery

Development and application of a high-content virion display human GPCR array

Syu, G. D., Wang, S. C., Ma, G., Liu, S., Pearce, D., Prakash, A., Henson, B., Weng, L. C., Ghosh, D., Ramos, P., Eichinger, D., Pino, I., Dong, X., Xiao, J., Wang, S., Tao, N., Kim, K. S., Desai, P. J. & Zhu, H., Dec 1 2019, In : Nature communications. 10, 1, 1997.

Research output: Contribution to journalArticle

Open Access
G-Protein-Coupled Receptors
Virion
proteins
Ligands
ligands

Direct visualization of coexisting channels of interaction in CeSb

Jang, S., Kealhofer, R., John, C., Doyle, S., Hong, J. S., Shim, J. H., Si, Q., Erten, O., Denlinger, J. D. & Analytis, J. G., Mar 1 2019, In : Science advances. 5, 3, p. eaat7158

Research output: Contribution to journalArticle

interactions
electrons
metalloids
photoelectric emission
superconductivity

Dopant profiling in p-i-n GaN structures using secondary electrons

Alugubelli, S. R., Fu, H., Fu, K., Liu, H., Zhao, Y. & Ponce, F., Jul 7 2019, In : Journal of Applied Physics. 126, 1, 015704.

Research output: Contribution to journalArticle

Open Access
secondary emission
electron beams
electron emission
electrons
electric potential
1 Citation (Scopus)

Doping dependence of the optical dielectric function in n-type germanium

Xu, C., Kouvetakis, J. & Menendez, J., Feb 28 2019, In : Journal of Applied Physics. 125, 8, 085704.

Research output: Contribution to journalArticle

Open Access
germanium
photoelectronics
optical transition
microelectronics
ellipsometry

Dynamo effect in decaying helical turbulence

Brandenburg, A., Kahniashvili, T., Mandal, S., Pol, A. R., Tevzadze, A. G. & Vachaspati, T., Feb 1 2019, In : Physical Review Fluids. 4, 2

Research output: Contribution to journalArticle

Helicity
Turbulence
Magnetic Field
Magnetic fields
Kinetics
1 Citation (Scopus)

Effective Dielectric Constant of Water at the Interface with Charged C 60 Fullerenes

Sarhangi, S. M., Waskasi, M. M., Hashemianzadeh, S. M. & Matyushov, D., Apr 11 2019, In : Journal of Physical Chemistry B. 123, 14, p. 3135-3143 9 p.

Research output: Contribution to journalArticle

Fullerenes
fullerenes
Permittivity
permittivity
Hydration

Effect of InAs quantum dots capped with GaAs on atomic-scale ordering in Ga 0.5 In 0.5 P

Su, P. Y., Liu, H., Kawabata, R. M. S., Weiner, E. C., Jakomin, R., Pires, M. P., King, R., Souza, P. L. & Ponce, F., Feb 7 2019, In : Journal of Applied Physics. 125, 5, 053104.

Research output: Contribution to journalArticle

quantum dots
indium
cathodoluminescence
vapor phase epitaxy
insertion

Enhanced vibrational electron energy-loss spectroscopy of adsorbate molecules

Kordahl, D. & Dwyer, C., Mar 28 2019, In : Physical Review B. 99, 10, 104110.

Research output: Contribution to journalArticle

Electron energy loss spectroscopy
Adsorbates
energy dissipation
electron energy
Nanoparticles

Fermi surface enlargement on the Kondo lattice

Quinn, E. & Erten, O., Jun 11 2019, In : Physical Review B. 99, 24, 245123.

Research output: Contribution to journalArticle

Fermi surface
Fermions
Crystal lattices
Fermi surfaces
degrees of freedom
photoproduction
protons
polarization
asymmetry
photons

Forward model for propagation-based X-ray phase contrast imaging in parallel- and conebeam geometry

Shanblatt, E. R., Sung, Y., Gupta, R., Nelson, B. J., Leng, S., Graves, W. & McCollough, C. H., Jan 1 2019, In : Optics Express. 27, 4, p. 4504-4521 18 p.

Research output: Contribution to journalArticle

phase contrast
propagation
geometry
x rays
cones
1 Citation (Scopus)

Gate controlling of quantum interference and direct observation of anti-resonances in single molecule charge transport

Li, Y., Buerkle, M., Li, G., Rostamian, A., Wang, H., Wang, Z., Bowler, D. R., Miyazaki, T., Xiang, L., Asai, Y., Zhou, G. & Tao, N., Jan 1 2019, In : Nature materials.

Research output: Contribution to journalArticle

Fermi level
Charge transfer
Molecular orbitals
interference
Molecules

High-viscosity injector-based pink-beam serial crystallography of microcrystals at a synchrotron radiation source

Martin-Garcia, J. M., Zhu, L., Mendez, D., Lee, M. Y., Chun, E., Li, C., Hu, H., Subramanian, G., Kissick, D., Ogata, C., Henning, R., Ishchenko, A., Dobson, Z., Zhang, S., Weierstall, U., Spence, J., Fromme, P., Zatsepin, N., Fischetti, R. F., Cherezov, V. & 1 others, Liu, W., Jan 1 2019, In : IUCrJ. 6, p. 412-425 14 p.

Research output: Contribution to journalArticle

Open Access
Crystallography
Microcrystals
Synchrotrons
microcrystals
Synchrotron radiation

Hubble Space Telescope Far-UV Spectroscopy of the Short Orbital Period Recurrent Nova CI Aql: Implications for White Dwarf Mass Evolution

Sion, E. M., Wilson, R. E., Godon, P., Starrfield, S., Williams, R. E. & Darnley, M. J., Feb 10 2019, In : Astrophysical Journal. 872, 1, 68.

Research output: Contribution to journalArticle

Hubble Space Telescope
outburst
spectroscopy
orbitals
cataclysmic variables

Identification of point defects using high-resolution electron energy loss spectroscopy

Wang, S., March, K., Ponce, F. & Rez, P., Mar 18 2019, In : Physical Review B. 99, 11, 115312.

Research output: Contribution to journalArticle

Electron energy loss spectroscopy
Point defects
point defects
energy dissipation
electron energy

Implantation-and etching-free high voltage vertical GaN p-n diodes terminated by plasma-hydrogenated p-GaN: Revealing the role of thermal annealing

Fu, H., Fu, K., Liu, H., Alugubelli, S. R., Huang, X., Chen, H., Montes, J., Yang, T. H., Yang, C., Zhou, J., Ponce, F. & Zhao, Y., Jan 1 2019, In : Applied Physics Express. 12, 5, 051015.

Research output: Contribution to journalArticle

Open Access
Electric breakdown
electrical faults
high voltages
Etching
implantation

Influence of substrate temperature on properties of pyrite thin films deposited using a sequential coevaporation technique

Walimbe, A., Wertheim, A., Ravi, A., Kopas, C., Saxena, A., Singh, R., Lehner, S. W., Domenico, J., Makar, J., Carpenter, R., Buseck, P. R. & Newman, N., Jan 1 2019, In : Thin Solid Films. 669, p. 49-55 7 p.

Research output: Contribution to journalArticle

Pyrites
pyrites
Thin films
Substrates
thin films
1 Citation (Scopus)

Kinetic inductance detectors for the OLIMPO experiment: Design and pre-flight characterization

Paiella, A., Coppolecchia, A., Lamagna, L., Ade, P. A. R., Battistelli, E. S., Castellano, M. G., Colantoni, I., Columbro, F., D'Alessandro, G., De Bernardis, P., Gordon, S., Masi, S., Mauskopf, P., Pettinari, G., Piacentini, F., Pisano, G., Presta, G. & Tucker, C., Jan 21 2019, In : Journal of Cosmology and Astroparticle Physics. 2019, 1, 039.

Research output: Contribution to journalArticle

Open Access
experiment design
inductance
flight
detectors
kinetics

Light-controlled configurable colorimetric sensing array

Yu, J., Qin, X., Wang, D., Lin, C., Xian, X. & Tao, N., Jan 1 2019, In : Analytical chemistry.

Research output: Contribution to journalArticle

Gases
Colorimetry
Smartphones
Sensor arrays
Light sources

Low-temperature specific heat capacity measurements and application to Mars thermal modeling

Vu, T. H., Piqueux, S., Choukroun, M., Edwards, C. S., Christensen, P. & Glotch, T. D., Mar 15 2019, In : Icarus. 321, p. 824-840 17 p.

Research output: Contribution to journalArticle

heat capacity
inertia
mars
Mars
specific heat

Molecular beam epitaxial growth and structural properties of hetero-crystalline and heterovalent PbTe/CdTe/InSb structures

Lassise, M. B., McCarthy, T. T., Tracy, B. D., Smith, D. & Zhang, Y. H., Jul 28 2019, In : Journal of Applied Physics. 126, 4, 045708.

Research output: Contribution to journalArticle

Open Access
molecular beams
halites
zincblende
chalcogenides
photometers

Neutralizing the polarization effect of diamond diode detectors using periodic forward bias pulses

Holmes, J. M., Dutta, M., Koeck, F. A., Benipal, M. K., Hathwar, R., Brown, J., Fox, B., Johnson, H., Zaniewski, A., Alarcon, R., Chowdhury, S., Goodnick, S. & Nemanich, R., Apr 1 2019, In : Diamond and Related Materials. 94, p. 162-165 4 p.

Research output: Contribution to journalArticle

Diamond
Diamonds
Diodes
Polarization
Detectors

Non-cryogenic structure of a chloride pump provides crucial clues to temperature-dependent channel transport efficiency

Yun, J. H., Li, X., Park, J. H., Wang, Y., Ohki, M., Jin, Z., Lee, W., Park, S. Y., Hu, H., Li, C., Zatsepin, N., Hunter, M. S., Sierra, R. G., Koralek, J., Yoon, C. H., Cho, H. S., Weierstall, U., Tang, L., Liu, H. & Lee, W., Jan 1 2019, In : Journal of Biological Chemistry. 294, 3, p. 794-804 11 p.

Research output: Contribution to journalArticle

Chlorides
Pumps
Rhodopsin
X ray lasers
Temperature
1 Citation (Scopus)
Free energy
Thermodynamics
Bandwidth
vibration
Molecules
1 Citation (Scopus)

Non-uniform Mg distribution in GaN epilayers grown on mesa structures for applications in GaN power electronics

Liu, H., Fu, H., Fu, K., Alugubelli, S. R., Su, P. Y., Zhao, Y. & Ponce, F., Feb 25 2019, In : Applied Physics Letters. 114, 8, 082102.

Research output: Contribution to journalArticle

Open Access
mesas
luminescence
electronics
crystals
2 Citations (Scopus)

Numerical Study of Inflationary Preheating with Arbitrary Power-law Potential and a Realization of Curvaton Mechanism

Jiang, J., Liang, Q., Cai, Y. F., Easson, D. & Zhang, Y., May 10 2019, In : Astrophysical Journal. 876, 2, 136.

Research output: Contribution to journalArticle

inflation
entropy
power law
perturbation
heating

Optical Imaging of Charges with Atomically Thin Molybdenum Disulfide

Zhu, H., Zhang, F., Wang, H., Lu, Z., Chen, H. Y., Li, J. & Tao, N., Jan 1 2019, (Accepted/In press) In : ACS Nano.

Research output: Contribution to journalArticle

molybdenum disulfides
Molybdenum
Imaging techniques
Molecules
Charge distribution
1 Citation (Scopus)

Precision photon spectra for wino annihilation

Baumgart, M., Cohen, T., Moulin, E., Moult, I., Rinchiuso, L., Rodd, N. L., Slatyer, T. R., Stewart, I. W. & Vaidya, V., Jan 1 2019, In : Journal of High Energy Physics. 2019, 1, 36.

Research output: Contribution to journalArticle

photons
predictions
logarithms
factorization
dark matter
1 Citation (Scopus)

Prediction of a topological p + ip excitonic insulator with parity anomaly

Wang, R., Erten, O., Wang, B. & Xing, D. Y., Dec 1 2019, In : Nature Communications. 10, 1, 210.

Research output: Contribution to journalArticle

Parity
parity
insulators
Electrons
anomalies
1 Citation (Scopus)

Quantitative Mapping of Endosomal DNA Processing by Single Molecule Counting

Prakash, V., Tsekouras, K., Venkatachalapathy, M., Heinicke, L., Presse, S., Walter, N. G. & Krishnan, Y., Mar 4 2019, In : Angewandte Chemie - International Edition. 58, 10, p. 3073-3076 4 p.

Research output: Contribution to journalArticle

DNA
Molecules
Processing
Deoxyribonucleases
Fluorescence microscopy
Electron holography
holography
Electrostatics
electrostatics
Charge density

Quantitative mechanical analysis of indentations on layered, soft elastic materials

Doss, B. L., Rahmani Eliato, K., Lin, K. H. & Ros, R., Jan 1 2019, In : Soft Matter. 15, 8, p. 1776-1784 9 p.

Research output: Contribution to journalArticle

indentation
Indentation
modulus of elasticity
Elastic moduli
Atomic force microscopy
1 Citation (Scopus)

Role of contacts in long-range protein conductance

Zhang, B., Song, W., Pang, P., Lai, H., Chen, Q., Zhang, P. & Lindsay, S., Jan 1 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 13, p. 5886-5891 6 p.

Research output: Contribution to journalArticle

Open Access
Electrodes
Proteins
Ebolavirus
Ligands
HIV Antibodies

Self-assembled Bismuth Selenide (Bi 2 Se 3 ) quantum dots grown by molecular beam epitaxy

Claro, M. S., Levy, I., Gangopadhyay, A., Smith, D. & Tamargo, M. C., Dec 1 2019, In : Scientific reports. 9, 1, 3370.

Research output: Contribution to journalArticle

Open Access
Quantum Dots
Bismuth
Atomic Force Microscopy
Growth
Selenium

Shape transform phasing of edgy nanocrystals

Chen, J. P. J., Donatelli, J. J., Schmidt, K. & Kirian, R., Jan 1 2019, In : Acta Crystallographica Section A: Foundations and Advances. 75, p. 239-259 21 p.

Research output: Contribution to journalArticle

Nanoparticles
Nanocrystals
nanocrystals
X-Rays
Crystals

Single Molecule Identification and Quantification of Glycosaminoglycans Using Solid-State Nanopores

Im, J., Lindsay, S., Wang, X. & Zhang, P., Jan 1 2019, In : ACS Nano.

Research output: Contribution to journalArticle

heparins
Nanopores
Glycosaminoglycans
solid state
Molecules
3 Citations (Scopus)

Snapshot of an oxygen intermediate in the catalytic reaction of cytochrome c oxidase

Ishigami, I., Lewis-Ballester, A., Echelmeier, A., Brehm, G., Zatsepin, N., Grant, T. D., Coe, J. D., Lisova, S., Nelson, G., Zhang, S., Dobson, Z. F., Boutet, S., Sierra, R. G., Batyuk, A., Fromme, P., Fromme, R., Spence, J., Ros, A., Yeh, S. R. & Rousseau, D. L., Feb 26 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 9, p. 3572-3577 6 p.

Research output: Contribution to journalArticle

Electron Transport Complex IV
Oxygen
Protons
Protein Conformation
Crystallography
1 Citation (Scopus)

SPIND: A reference-based auto-indexing algorithm for sparse serial crystallography data

Li, C., Li, X., Kirian, R., Spence, J., Liu, H. & Zatsepin, N., Jan 1 2019, In : IUCrJ. 6, p. 72-84 13 p.

Research output: Contribution to journalArticle

Crystallography
Diffraction patterns
crystallography
Boidae
Proteins
1 Citation (Scopus)

Stable cosmic time crystals

Easson, D. & Manton, T., Feb 15 2019, In : Physical Review D. 99, 4, 043507.

Research output: Contribution to journalArticle

Open Access
crystals
scalars
perturbation
gradients
cycles

Strain-dependence of χ (2) in thin film barium strontium titanate

Foster, N. D., Edmondson, B. I., Ekerdt, J. G., Smith, D. & Downer, M. C., Feb 1 2019, In : AIP Advances. 9, 2, 025312.

Research output: Contribution to journalArticle

Open Access
strontium
barium
harmonic generations
thin films
electro-optics