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2016

A high-precision rule-based extraction system for expanding geospatial metadata in GenBank records

Tahsin, T., Weissenbacher, D., Rivera, R., Beard, R., Firago, M., Wallstrom, G., Scotch, M. & Gonzalez, G., Sep 1 2016, In : Journal of the American Medical Informatics Association. 23, 5, p. 934-941 8 p., ocv172.

Research output: Contribution to journalArticle

8 Scopus citations

An approximate markov model for the wright–fisher diffusion and its application to time series data

Ferrer-Admetlla, A., Leuenberger, C., Jensen, J. D. & Wegmann, D., Jun 2016, In : Genetics. 203, 2, p. 831-846 16 p.

Research output: Contribution to journalArticle

15 Scopus citations

An experimental evaluation of drug-induced mutational meltdown as an antiviral treatment strategy

Bank, C., Renzette, N., Liu, P., Matuszewski, S., Shim, H., Foll, M., Bolon, D. N. A., Zeldovich, K. B., Kowalik, T. F., Finberg, R. W., Wang, J. P. & Jensen, J., Nov 1 2016, In : Evolution. 70, 11, p. 2470-2484 15 p.

Research output: Contribution to journalArticle

11 Scopus citations

A spatial model of the efficiency of T cell search in the influenza-infected lung

Levin, D., Forrest, S., Banerjee, S., Clay, C., Cannon, J., Moses, M. & Koster, F., Jun 7 2016, In : Journal of Theoretical Biology. 398, p. 52-63 12 p.

Research output: Contribution to journalArticle

6 Scopus citations

Detecting and quantifying changing selection intensities from time-sampled polymorphism data

Shim, H., Laurent, S., Matuszewski, S., Foll, M. & Jensen, J. D., 2016, In : G3: Genes, Genomes, Genetics. 6, 4, p. 893-904 12 p.

Research output: Contribution to journalArticle

9 Scopus citations

Identifying determinants of heterogeneous transmission dynamics of the middle east respiratory syndrome (MERS) outbreak in the Republic of Korea, 2015: A Retrospective epidemiological analysis

Nishiura, H., Endo, A., Saitoh, M., Kinoshita, R., Ueno, R., Nakaoka, S., Miyamatsu, Y., Dong, Y., Chowell, G. & Mizumoto, K., 2016, In : BMJ open. 6, 2, e009936.

Research output: Contribution to journalArticle

20 Scopus citations

Immunological characterization of plant-based HIV-1 Gag/Dgp41 virus-like particles

Kessans, S. A., Linhart, M. D., Meador, L. R., Kilbourne, J., Hogue, B., Fromme, P., Matoba, N. & Leket-Mor, T., Mar 2016, In : PloS one. 11, 3, e0151842.

Research output: Contribution to journalArticle

7 Scopus citations

Molecular Basis for Differential Patterns of Drug Resistance in Influenza N1 and N2 Neuraminidase

Prachanronarong, K. L., Özen, A., Thayer, K. M., Yilmaz, L. S., Zeldovich, K. B., Bolon, D. N., Kowalik, T. F., Jensen, J., Finberg, R. W., Wang, J. P., Kurt-Yilmaz, N. & Schiffer, C. A., Dec 13 2016, In : Journal of Chemical Theory and Computation. 12, 12, p. 6098-6108 11 p.

Research output: Contribution to journalArticle

9 Scopus citations

Perceptions of Hong Kong Chinese women toward influenza vaccination during pregnancy

Yuen, C. Y. S., Dodgson, J. E. & Tarrant, M., Jan 2 2016, In : Vaccine. 34, 1, p. 33-40 8 p.

Research output: Contribution to journalArticle

10 Scopus citations

Whole-Virus Screening to Develop Synbodies for the Influenza Virus

Gupta, N., Lainson, J., Domenyuk, V., Zhao, Z-G., Johnston, S. & Diehnelt, C., Oct 19 2016, In : Bioconjugate Chemistry. 27, 10, p. 2505-2512 8 p.

Research output: Contribution to journalArticle

6 Scopus citations
2015

Analyses of Merging Clinical and Viral Genetic Data for Influenza Surveillance

Magee, D., Beard, R. & Scotch, M., Jan 1 2015, In : AMIA ... Annual Symposium proceedings. AMIA Symposium. 2015, p. 1995-2004 10 p.

Research output: Contribution to journalArticle

Assessing the risk of observing multiple generations of middle east respiratory syndrome (MERS) cases given an imported case

Nishiura, H., Miyamatsu, Y., Chowell, G. & Saitoh, M., Jul 9 2015, In : Eurosurveillance. 20, 27, p. 6-11 6 p.

Research output: Contribution to journalArticle

Open Access
29 Scopus citations

Biophysical characterization of a vaccine candidate against HIV-1: The transmembrane and membrane proximal domains of HIV-1 gp41 as a maltose binding protein fusion

Gong, Z., Martin-Garcia, J. M., Daskalova, S. M., Craciunescu, F. M., Song, L., Dörner, K., Hansen, D., Yang, J. H., LaBaer, J., Hogue, B., Leket-Mor, T. & Fromme, P., Aug 21 2015, In : PloS one. 10, 8, e0136507.

Research output: Contribution to journalArticle

3 Scopus citations

Chemical-free inactivated whole influenza virus vaccine prepared by ultrashort pulsed laser treatment

Tsen, S. W. D., Donthi, N., La, V., Hsieh, W. H., Li, Y. D., Knoff, J., Chen, A., Wu, T. C., Hung, C. F., Achilefu, S. & Tsen, K-T., May 1 2015, In : Journal of biomedical optics. 20, 5, 051008.

Research output: Contribution to journalArticle

3 Scopus citations

Combining phylogeography and spatial epidemiology to uncover predictors of H5N1 influenza A virus diffusion

Magee, D., Beard, R., Suchard, M. A., Lemey, P. & Scotch, M., Jan 1 2015, In : Archives of virology. 160, 1, p. 215-224 10 p.

Research output: Contribution to journalArticle

16 Scopus citations

Comparison of immunogenicity in rhesus macaques of transmitted-founder, HIV-1 Group M consensus, and trivalent mosaic envelope vaccines formulated as a DNA prime, NYVAC, and envelope protein boost

Hulot, S. L., Korber, B., Giorgi, E. E., Vandergrift, N., Saunders, K. O., Balachandran, H., Mach, L. V., Lifton, M. A., Pantaleo, G., Tartaglia, J., Phogat, S., Jacobs, B., Kibler, K., Perdiguero, B., Gomez, C. E., Esteban, M., Rosati, M., Felber, B. K., Pavlakis, G. N., Parks, R. & 10 others, Lloyd, K., Sutherland, L., Scearce, R., Letvin, N. L., Seaman, M. S., Alam, S. M., Montefiori, D., Liao, H. X., Haynes, B. F. & Santra, S., Jan 1 2015, In : Journal of virology. 89, 12, p. 6462-6480 19 p.

Research output: Contribution to journalArticle

27 Scopus citations

Coronavirus envelope (E) protein remains at the site of assembly

Venkatagopalan, P., Daskalova, S. M., Lopez, L. A., Dolezal, K. A. & Hogue, B., Apr 1 2015, In : Virology. 478, p. 75-85 11 p.

Research output: Contribution to journalArticle

21 Scopus citations

Derivatives of mesoxalic acid block translocation of HIV-1 reverse transcriptase

Bernatchez, J. A., Paul, R., Tchesnokov, E. P., Ngure, M., Beilhartz, G. L., Berghuis, A. M., Lavoie, R., Li, L., Auger, A., Melnyk, R. A., Grobler, J. A., Miller, M. D., Hazuda, D. J., Hecht, S. & Götte, M., Jan 16 2015, In : Journal of Biological Chemistry. 290, 3, p. 1474-1484 11 p.

Research output: Contribution to journalArticle

9 Scopus citations

Efficient generation of influenza virus with a mouse RNA polymerase I-driven all-in-one plasmid

Zhang, X. & Curtiss, R., Jun 22 2015, In : Virology Journal. 12, 1, 95.

Research output: Contribution to journalArticle

11 Scopus citations

Estimating the risk of Middle East respiratory syndrome (MERS) death during the course of the outbreak in the Republic of Korea, 2015

Mizumoto, K., Saitoh, M., Chowell, G., Miyamatsu, Y. & Nishiura, H., Oct 1 2015, In : International Journal of Infectious Diseases. 39, p. 7-9 3 p.

Research output: Contribution to journalArticle

22 Scopus citations

Evolution of 2014/15 H3N2 influenza viruses circulating in US: Consequences for vaccine effectiveness and possible new pandemic

Veljkovic, V., Paessler, S., Glisic, S., Prljic, J., Perovic, V. R., Veljkovic, N. & Scotch, M., 2015, In : Frontiers in Microbiology. 6, DEC, 01456.

Research output: Contribution to journalArticle

8 Scopus citations

Generation of influenza virus from avian cells infected by salmonella carrying the viral genome

Zhang, X., Kong, W., Wanda, S. Y., Xin, W., Alamuri, P. & Curtiss, R., Mar 5 2015, In : PloS one. 10, 3, e0119041.

Research output: Contribution to journalArticle

5 Scopus citations

Head-to-head comparison of poxvirus NYVAC and ALVAC vectors expressing identical HIV-1 clade C immunogens in prime-boost combination with Env protein in nonhuman primates

García-Arriaza, J., Perdiguero, B., Heeney, J., Seaman, M., Montefiori, D. C., Labranche, C., Yates, N. L., Shen, X., Tomaras, G. D., Ferrari, G., Foulds, K. E., McDermott, A., Kao, S. F., Roederer, M., Hawkins, N., Self, S., Yao, J., Farrell, P., Phogat, S., Tartaglia, J. & 12 others, Barnett, S. W., Burke, B., Cristillo, A., Weiss, D., Lee, C., Kibler, K., Jacobs, B., Asbach, B., Wagner, R., Ding, S., Pantaleo, G. & Esteban, M., Jan 1 2015, In : Journal of virology. 89, 16, p. 8525-8539 15 p.

Research output: Contribution to journalArticle

29 Scopus citations

Identification of an avian polyomavirus associated with Adé lie penguins (pygoscelis adeliae)

Varsani, A., Porzig, E. L., Jennings, S., Kraberger, S., Farkas, K., Julian, L., Massaro, M., Ballard, G. & Ainley, D. G., Apr 1 2015, In : Journal of General Virology. 96, 4, p. 851-857 7 p.

Research output: Contribution to journalArticle

24 Scopus citations

Intense seasonal A/H1N1 influenza in Mexico, winter 2013-2014

Dávila-Torres, J., Chowell, G., Borja-Aburto, V. H., Viboud, C., Grajalez-Muñiz, C. & Miller, M. A., 2015, In : Archives of Medical Research. 46, 1, p. 63-70 8 p.

Research output: Contribution to journalArticle

10 Scopus citations