IAFSE-BHSE: Bioengineering, Harrington Department of

Research Output 1970 2019

2019

A faster PISTOL for 1 H MR-based quantitative tissue oximetry

Vidya Shankar, R. & Kodibagkar, V., Jan 1 2019, In : NMR in Biomedicine. e4076.

Research output: Contribution to journalArticle

Siloxanes
Oximetry
Oxygenation
Protons
Tissue
1 Citation (Scopus)
Electrophoresis
Theoretical Models
Mathematical models
Rhodococcus
Pasteurella multocida

A model for meme popularity growth in social networking systems based on biological principle and human interest dynamics

Wang, L. Z., Zhao, Z. D., Jiang, J., Guo, B. H., Wang, X., Huang, Z. G. & Lai, Y-C., Feb 1 2019, In : Chaos. 29, 2, 023136.

Research output: Contribution to journalArticle

Social Networking
Growth Model
Distinct
Social Behavior
Model

A single session of trip-specific training modifies trunk control following treadmill induced balance perturbations in stroke survivors

Nevisipour, M., Grabiner, M. D. & Honeycutt, C., May 1 2019, In : Gait and Posture. 70, p. 222-228 7 p.

Research output: Contribution to journalArticle

Stroke
Accidental Falls
Amputees
Biomechanical Phenomena
Incidence

A three-dimensional (3D) organotypic microfluidic model for glioma stem cells – Vascular interactions

Truong, D., Fiorelli, R., Barrientos, E. S., Melendez, E. L., Sanai, N., Mehta, S. & Nikkhah, M., Apr 1 2019, In : Biomaterials. 198, p. 63-77 15 p.

Research output: Contribution to journalArticle

Microfluidics
Stem cells
Glioma
Cell Communication
Blood Vessels

Benchmarking transcranial electrical stimulation finite element models: A comparison study

Indahlastari, A., Chauhan, M. & Sadleir, R., Jan 1 2019, In : Journal of Neural Engineering. 16, 2, 026019.

Research output: Contribution to journalArticle

Benchmarking
Current density
Pipelines
Boundary conditions
Head

Biomaterials, Cells, and Patho-physiology: Building Better Organoids and On-Chip Technologies

Singh, A., Nikkhah, M. & Annabi, N., Apr 1 2019, In : Biomaterials. 198, p. 1-2 2 p.

Research output: Contribution to journalEditorial

Organoids
Cell Physiological Phenomena
Physiology
Biocompatible Materials
Biomaterials
Biomarkers
Neurosciences
Brain
Health
Wounds and Injuries

Declines in motor transfer following upper extremity task-specific training in older adults

Walter, C. S., Hengge, C. R., Lindauer, B. E. & Schaefer, S., Feb 1 2019, In : Experimental Gerontology. 116, p. 14-19 6 p.

Research output: Contribution to journalArticle

Upper Extremity
Activities of Daily Living
Geriatrics
Linear regression
Regression analysis

Effects of vibrotactile feedback and grasp interface compliance on perception and control of a sensorized myoelectric hand

Pena, A. E., Rincon-Gonzalez, L., Abbas, J. & Jung, R., Jan 1 2019, In : PLoS One. 14, 1, e0210956.

Research output: Contribution to journalArticle

Hand Strength
compliance
Compliance
hands
Hand

Engineered orthogonal quorum sensing systems for synthetic gene regulation in escherichia coli

Tekel, S. J., Smith, C. L., Lopez, B., Mani, A., Connot, C., Livingstone, X. & Haynes, K., Jan 1 2019, In : Frontiers in Bioengineering and Biotechnology. 7, MAR, 80.

Research output: Contribution to journalArticle

Open Access
Synthetic Genes
Quorum Sensing
Crosstalk
Gene expression
Escherichia coli

Extracellular vesicles as cancer liquid biopsies: From discovery, validation, to clinical application

Zhao, Z., Fan, J., Hsu, Y. M. S., Lyon, C. J., Ning, B. & Hu, Y., Jan 1 2019, In : Lab on a Chip. 19, 7, p. 1114-1140 27 p.

Research output: Contribution to journalReview article

Biopsy
Biomarkers
Tumor Biomarkers
Liquids
Neoplasms

Fast data acquisition techniques in magnetic resonance spectroscopic imaging

Vidya Shankar, R., Chang, J. C., Hu, H. H. & Kodibagkar, V., Jan 1 2019, (Accepted/In press) In : NMR in Biomedicine. e4046.

Research output: Contribution to journalArticle

Magnetic resonance
Data acquisition
Magnetic Resonance Imaging
Imaging techniques
Echo-Planar Imaging

Isolation and identification of Listeria monocytogenes utilizing DC insulator-based dielectrophoresis

Crowther, C. V., Hilton, S. H., Kemp, L. K. & Hayes, M., Jan 1 2019, In : Analytica Chimica Acta.

Research output: Contribution to journalArticle

Listeria
Listeria monocytogenes
Pathogens
Electrophoresis
Disease control

Metadherin Is a Prognostic Apoptosis Modulator in Mesothelioma Induced via NF-κB-Mediated Signaling

Zhang, L., Singh, A., Plaisier, C., Pruett, N., Ripley, R. T., Schrump, D. S. & Hoang, C. D., Jun 1 2019, In : Translational Oncology. 12, 6, p. 859-870 12 p.

Research output: Contribution to journalArticle

Open Access
Mesothelioma
Apoptosis
Heterografts
Phenotype
Neoplasms
1 Citation (Scopus)

Multifunctional CRISPR-Cas9 with engineered immunosilenced human T cell epitopes

Ferdosi, S. R., Ewaisha, R., Moghadam, F., Krishna, S., Park, J., Ebrahimkhani, M. R., Kiani, S. & Anderson, K., Dec 1 2019, In : Nature communications. 10, 1, 1842.

Research output: Contribution to journalArticle

Open Access
Clustered Regularly Interspaced Short Palindromic Repeats
T-Lymphocyte Epitopes
T-cells
Streptococcus pyogenes
T-Lymphocytes

Nanotrap-enabled quantification of KRAS-induced peptide hydroxylation in blood for cancer early detection

Deng, Z., Zhao, Z., Ning, B., Basilio, J., Mann, K., Fu, J., Gu, Y., Ye, Y., Wu, X., Fan, J., Chiao, P. & Hu, Y., Jan 1 2019, In : Nano Research.

Research output: Contribution to journalArticle

Hydroxylation
Bradykinin
Peptides
Blood
Prolyl Hydroxylases

Photoacoustic Flow System for the Detection of Ovarian Circulating Tumor Cells Utilizing Copper Sulfide Nanoparticles

Lusk, J. F., Miranda, C., Howell, M., Chrest, M., Eshima, J. & Smith, B., Mar 11 2019, In : ACS Biomaterials Science and Engineering. 5, 3, p. 1553-1560 8 p.

Research output: Contribution to journalArticle

Photoacoustic effect
Sulfides
Contrast Media
Tumors
Copper
1 Citation (Scopus)

Point-of-Care Tissue Analysis Using Miniature Mass Spectrometer

Zou, R., Cao, W., Chong, L., Hua, W., Xu, H., Mao, Y., Page, J., Shi, R., Xia, Y., Hu, Y., Zhang, W. & Ouyang, Z., Jan 2 2019, In : Analytical Chemistry. 91, 1, p. 1157-1163 7 p.

Research output: Contribution to journalArticle

Mass spectrometers
Tissue
Lipids
Ionization
Diagnostic products

Predicting Motor Sequence Learning in People With Parkinson Disease

Olivier, G. N., Paul, S. S., Lohse, K. R., Walter, C. S., Schaefer, S. & Dibble, L. E., Jan 1 2019, In : Journal of neurologic physical therapy : JNPT. 43, 1, p. 33-41 9 p.

Research output: Contribution to journalArticle

Parkinson Disease
Learning
Levodopa
Motor Skills
Rehabilitation

Project honeybee: Clinical applications for wearable biosensors

Hartwell, L., Ross, H. M. & LaBelle, J., Jun 1 2019, In : Biomedical Microdevices. 21, 2, 37.

Research output: Contribution to journalArticle

Biosensing Techniques
Biosensors
Nursing
Equipment and Supplies
Research

Sensorimotor uncertainty modulates corticospinal excitability during skilled object manipulation

Davare, M., Parikh, P. J. & Santello, M., Apr 1 2019, In : Journal of neurophysiology. 121, 4, p. 1162-1170 9 p.

Research output: Contribution to journalArticle

Open Access
Uncertainty
Aptitude
Hand Strength
Hand
1 Citation (Scopus)

The influence of electrically conductive and non-conductive nanocomposite scaffolds on the maturation and excitability of engineered cardiac tissues

Navaei, A., Rahmani Eliato, K., Ros, R., Migrino, R. Q., Willis, B. C. & Nikkhah, M., Feb 1 2019, In : Biomaterials Science. 7, 2, p. 585-595 11 p.

Research output: Contribution to journalArticle

Nanostructured materials
Scaffolds
Nanocomposites
Tissue
Stiffness matrix

The softpro project: Synergy-based open-source technologies for prosthetics and rehabilitation

Piazza, C., Catalano, M. G., Bianchi, M., Ricciardi, E., Prattichizzo, D., Haddadin, S., Luft, A. R., Lambercy, O., Gassert, R., Jakubowitz, E., Van Der Kooij, H., Tonis, F., Bonomo, F., de Jonge, B., Ward, T., Zhao, K. D., Santello, M. & Bicchi, A., Jan 1 2019, Biosystems and Biorobotics. Springer International Publishing, p. 370-374 5 p. (Biosystems and Biorobotics; vol. 22).

Research output: Chapter in Book/Report/Conference proceedingChapter

Prosthetics
Patient rehabilitation
Robotics
Industrial research
Innovation

Third generation impedimetric sensor employing direct electron transfer type glucose dehydrogenase

Ito, Y., Okuda-Shimazaki, J., Tsugawa, W., Loew, N., Shitanda, I., Lin, C. E., LaBelle, J. & Sode, K., Mar 15 2019, In : Biosensors and Bioelectronics. 129, p. 189-197 9 p.

Research output: Contribution to journalArticle

Glucose 1-Dehydrogenase
Glucose
Enzyme sensors
Electrons
Dielectric Spectroscopy

Three-dimensional microengineered models of human cardiac diseases

Veldhuizen, J., Migrino, R. Q. & Nikkhah, M., Apr 3 2019, In : Journal of Biological Engineering. 13, 1, 29.

Research output: Contribution to journalReview article

Open Access
Heart Diseases
Tissue
Therapeutic Human Experimentation
Biomimetics
Disease Progression
2018

A Disposable Tear Glucose Biosensor—Part 5: Improvements in Reagents and Tear Sampling Component

Lin, C. E., Ito, Y., Deng, A., Johns, J., Matloff, D., Cook, C. B., Sode, K. & LaBelle, J., Apr 1 2018, (Accepted/In press) In : Journal of diabetes science and technology.

Research output: Contribution to journalArticle

Glucose sensors
Glucose 1-Dehydrogenase
Tears
Glucose
Sampling
1 Citation (Scopus)

A low cost mobile phone dark-field microscope for nanoparticle-based quantitative studies

Sun, D. & Hu, Y., Jan 15 2018, In : Biosensors and Bioelectronics. 99, p. 513-518 6 p.

Research output: Contribution to journalArticle

Cell Phones
Mobile phones
Nanoparticles
Microscopes
Costs and Cost Analysis

Alternative methods for virtual heart transplant—Size matching for pediatric heart transplantation with and without donor medical images available

Plasencia, J. D., Kamarianakis, Y., Ryan, J. R., Karamlou, T., Park, S. S., Nigro, J. J., Frakes, D., Pophal, S. G., Lagerstrom, C. F., Velez, D. A. & Zangwill, S. D., Jan 1 2018, (Accepted/In press) In : Pediatric Transplantation.

Research output: Contribution to journalArticle

Heart Transplantation
Tissue Donors
Allografts
Pediatrics
Transplants
12 Citations (Scopus)

An enhanced CRISPR repressor for targeted mammalian gene regulation

Yeo, N. C., Chavez, A., Lance-Byrne, A., Chan, Y., Menn, D., Milanova, D., Kuo, C. C., Guo, X., Sharma, S., Tung, A., Cecchi, R. J., Tuttle, M., Pradhan, S., Lim, E. T., Davidsohn, N., Ebrahimkhani, M. R., Collins, J. J., Lewis, N. E., Kiani, S. & Church, G. M., Aug 1 2018, In : Nature Methods. 15, 8, p. 611-616 6 p.

Research output: Contribution to journalArticle

Clustered Regularly Interspaced Short Palindromic Repeats
Gene expression
Guide RNA
Genes
Endonucleases
2 Citations (Scopus)

An inhibitor screen identifies histone-modifying enzymes as mediators of polymer-mediated transgene expression from plasmid DNA

Christensen, M. D., Nitiyanandan, R., Meraji, S., Daer, R., Godeshala, S., Goklany, S., Haynes, K. & Rege, K., Sep 28 2018, In : Journal of Controlled Release. 286, p. 210-223 14 p.

Research output: Contribution to journalArticle

Transgenes
Histones
Polymers
Plasmids
DNA
1 Citation (Scopus)

An integrated biomanufacturing platform for the large-scale expansion and neuronal differentiation of human pluripotent stem cell-derived neural progenitor cells

Srinivasan, G., Morgan, D., Varun, D., Brookhouser, N. & Brafman, D., Jan 1 2018, (Accepted/In press) In : Acta Biomaterialia.

Research output: Contribution to journalArticle

Pluripotent Stem Cells
Central Nervous System Diseases
Bioreactors
Stem cells
Stem Cells

Antigen 85B peptidomic analysis allows species-specific mycobacterial identification

Zhang, W., Shu, Q., Zhao, Z., Fan, J., Lyon, C. J., Zelazny, A. M. & Hu, Y., Jan 8 2018, In : Clinical Proteomics. 15, 1, 1.

Research output: Contribution to journalArticle

Antigens
Peptides
Nontuberculous Mycobacteria
Mycobacterium
Lung
7 Citations (Scopus)

A roadmap for gene drives: using institutional analysis and development to frame research needs and governance in a systems context

Kuzma, J., Gould, F., Brown, Z., Collins, J., Delborne, J., Frow, E., Esvelt, K., Guston, D., Leitschuh, C., Oye, K. & Stauffer, S., Jan 24 2018, In : Journal of Responsible Innovation. 5, p. S13-S39

Research output: Contribution to journalArticle

Genes
Economics
Roadmap
Institutional development
Gene
2 Citations (Scopus)

Bilateral early activity in the hip flexors associated with falls in stroke survivors: Preliminary evidence from laboratory-induced falls

Celinskis, D., Grabiner, M. D. & Honeycutt, C., Jan 1 2018, In : Clinical Neurophysiology. 129, 1, p. 258-264 7 p.

Research output: Contribution to journalArticle

Hip
Stroke
Reflex
Stretch Reflex
Quadriceps Muscle
1 Citation (Scopus)

Blood–brainbarrier disruption dictates nanoparticle accumulation following experimental brain injury

Bharadwaj, V. N., Rowe, R. K., Harrison, J., Wu, C., Anderson, T. R., Lifshitz, J., Adelson, P. D., Kodibagkar, V. & Stabenfeldt, S., Oct 1 2018, In : Nanomedicine: Nanotechnology, Biology, and Medicine. 14, 7, p. 2155-2166 12 p.

Research output: Contribution to journalArticle

Nanoparticles
Brain Injuries
Brain
Percussion
Craniocerebral Trauma
1 Citation (Scopus)

Characterization of diverse homoserine lactone synthases in Escherichia coli

Daer, R., Barrett, C. M., Melendez, E. L., Wu, J., Tekel, S. J., Xu, J., Dennison, B., Muller, R. & Haynes, K., Aug 1 2018, In : PLoS One. 13, 8, e0202294.

Research output: Contribution to journalArticle

homoserine
lactones
Escherichia coli
quorum sensing
Quorum Sensing
4 Citations (Scopus)

Chemoresistance transmission via exosome-Mediated EphA2 transfer in pancreatic cancer

Fan, J., Wei, Q., Koay, E. J., Liu, Y., Ning, B., Bernard, P. W., Zhang, N., Han, H., Katz, M. H., Zhao, Z. & Hu, Y., Jan 1 2018, In : Theranostics. 8, 21, p. 5986-5994 9 p.

Research output: Contribution to journalArticle

Exosomes
Pancreatic Neoplasms
gemcitabine
Cell Line
Eph Family Receptors
3 Citations (Scopus)

Clinical evaluation of a blood assay to diagnose paucibacillary tuberculosis via bacterial antigens

Liu, C., Lyon, C. J., Bu, Y., Deng, Z., Walters, E., Li, Y., Zhang, L., Hesseling, A. C., Graviss, E. A. & Hu, Y., May 1 2018, In : Clinical Chemistry. 64, 5, p. 791-800 10 p.

Research output: Contribution to journalArticle

Bacterial Antigens
Mass spectrometry
Assays
Tuberculosis
Blood

Computing the ankle-brachial index with parallel computational fluid dynamics

Gounley, J., Draeger, E. W., Oppelstrup, T., Krauss, W. D., Gunnels, J. A., Chaudhury, R., Nair, P., Frakes, D., Leopold, J. A. & Randles, A., Jan 1 2018, (Accepted/In press) In : Journal of Biomechanics.

Research output: Contribution to journalArticle

Ankle Brachial Index
Hydrodynamics
Computational fluid dynamics
Geometry
Blood pressure

Concussion history is negatively associated with visual-motor force complexity: evidence for persistent effects on visual-motor integration

Raikes, A. C., Schaefer, S. & Studenka, B. E., Mar 1 2018, (Accepted/In press) In : Brain Injury. p. 1-8 8 p.

Research output: Contribution to journalArticle

Unconsciousness
Fingers
History
Costs and Cost Analysis
3 Citations (Scopus)

Coordinated plasticity of synapses and astrocytes underlies practice-driven functional vicariation in peri-infarct motor cortex

Kim, S. Y., Hsu, J. E., Husbands, L. C., Kleim, J. & Jones, T. A., Jan 3 2018, In : Journal of Neuroscience. 38, 1, p. 93-107 15 p.

Research output: Contribution to journalArticle

Motor Cortex
Astrocytes
Synapses
Anisomycin
Stroke

C-PLAD-SM: Extending component requirements with use cases and state machines

Gary, K. & Blake, M. B., 2018, In : Studies in Computational Intelligence. 722, p. 93-106 14 p.

Research output: Contribution to journalArticle

Specifications

Design, construction, and validation of histone-binding effectors in vitro and in cells

Tekel, S. J., Barrett, C. M., Vargas, D. A. & Haynes, K., Mar 17 2018, (Accepted/In press) In : Biochemistry.

Research output: Contribution to journalArticle

Post Translational Protein Processing
Histones
Chromatin
Proteins
Fusion reactions
1 Citation (Scopus)

Designer fungus FAD glucose dehydrogenase capable of direct electron transfer

Ito, K., Okuda-Shimazaki, J., Mori, K., Kojima, K., Tsugawa, W., Ikebukuro, K., Lin, C. E., LaBelle, J., Yoshida, H. & Sode, K., Jan 1 2018, (Accepted/In press) In : Biosensors and Bioelectronics.

Research output: Contribution to journalArticle

Glucose 1-Dehydrogenase
Glucose Dehydrogenases
Flavin-Adenine Dinucleotide
Fungi
Glucose

Development toward a novel integrated tear lactate sensor using Schirmer test strip and engineered lactate oxidase

Lin, C. E., Hiraka, K., Matloff, D., Johns, J., Deng, A., Sode, K. & LaBelle, J., Oct 1 2018, In : Sensors and Actuators, B: Chemical. 270, p. 525-529 5 p.

Research output: Contribution to journalArticle

lactate 2-monooxygenase
lactates
oxidase
Lactic Acid
strip
1 Citation (Scopus)

Dexterous manipulation: Bridging the gap between hand kinematics and kinetics

Santello, M., Jan 1 2018, Reach-to-Grasp Behavior: Brain, Behavior, and Modelling Across the Life Span. Taylor and Francis, p. 256-277 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Hand Strength
Biomechanical Phenomena
Hand
Central Nervous System
Research

Direct Measurement of a Biomarker's Native Optimal Frequency with Physical Adsorption Based Immobilization

Honikel, M. M., Lin, C. E., Cardinell, B. A., LaBelle, J. & Penman, A. D., Apr 27 2018, In : ACS Sensors. 3, 4, p. 823-831 9 p.

Research output: Contribution to journalArticle

biomarkers
Biomarkers
immobilization
Adsorption
Lactoferrin

Dopamine Replacement Medication Does Not Influence Implicit Learning of a Stepping Task in People With Parkinson’s Disease

Paul, S. S., Schaefer, S., Olivier, G. N., Walter, C. S., Lohse, K. R. & Dibble, L. E., Dec 1 2018, In : Neurorehabilitation and Neural Repair. 32, 12, p. 1031-1042 12 p.

Research output: Contribution to journalArticle

Levodopa
Parkinson Disease
Dopamine
Learning
Motor Skills
2 Citations (Scopus)

Dynamical properties of postural control in obese community-dwelling older adults

Frames, C. W., Soangra, R., Lockhart, T., Lach, J., Ha, D. S., Roberto, K. A. & Lieberman, A., Jun 1 2018, In : Sensors (Switzerland). 18, 6, 1692.

Research output: Contribution to journalArticle

Independent Living
obesity
Body Mass Index
Accidental Falls
Obesity