Toward G protein-coupled receptor structure-based drug design using X-ray lasers

Andrii Ishchenko, Benjamin Stauch, Gye Won Han, Alexander Batyuk, Anna Shiriaeva, Chufeng Li, Nadia Zatsepin, Uwe Weierstall, Wei Liu, Eriko Nango, Takanori Nakane, Rie Tanaka, Kensuke Tono, Yasumasa Joti, So Iwata, Isabel Moraes, Cornelius Gati, Vadim Cherezov

Research output: Contribution to journalArticle

1 Citation (Scopus)

Abstract

Rational structure-based drug design (SBDD) relies on the availability of a large number of co-crystal structures to map the ligand-binding pocket of the target protein and use this information for lead-compound optimization via an iterative process. While SBDD has proven successful for many drug-discovery projects, its application to G protein-coupled receptors (GPCRs) has been limited owing to extreme difficulties with their crystallization. Here, a method is presented for the rapid determination of multiple co-crystal structures for a target GPCR in complex with various ligands, taking advantage of the serial femtosecond crystallography approach, which obviates the need for large crystals and requires only submilligram quantities of purified protein. The method was applied to the human β2-adrenergic receptor, resulting in eight room-temperature co-crystal structures with six different ligands, including previously unreported structures with carvedilol and propranolol. The generality of the proposed method was tested with three other receptors. This approach has the potential to enable SBDD for GPCRs and other difficult-to-crystallize membrane proteins.

Original languageEnglish (US)
Pages (from-to)1106-1119
Number of pages14
JournalIUCrJ
Volume6
DOIs
StatePublished - Nov 1 2019
Externally publishedYes

Fingerprint

X ray lasers
Drug Design
G-Protein-Coupled Receptors
drugs
Lasers
Crystal structure
X-Rays
Ligands
proteins
Proteins
Pharmaceutical Preparations
Lead compounds
lasers
Crystallography
x rays
Information use
Drug Discovery
Crystallization
Propranolol
Adrenergic Receptors

Keywords

  • drug discovery
  • G protein-coupled receptors
  • membrane proteins
  • molecular recognition
  • protein structure
  • serial femtosecond crystallography
  • structure determination
  • X-ray free-electron lasers

ASJC Scopus subject areas

  • Chemistry(all)
  • Biochemistry
  • Materials Science(all)
  • Condensed Matter Physics

Cite this

Ishchenko, A., Stauch, B., Han, G. W., Batyuk, A., Shiriaeva, A., Li, C., ... Cherezov, V. (2019). Toward G protein-coupled receptor structure-based drug design using X-ray lasers. IUCrJ, 6, 1106-1119. https://doi.org/10.1107/S2052252519013137

Toward G protein-coupled receptor structure-based drug design using X-ray lasers. / Ishchenko, Andrii; Stauch, Benjamin; Han, Gye Won; Batyuk, Alexander; Shiriaeva, Anna; Li, Chufeng; Zatsepin, Nadia; Weierstall, Uwe; Liu, Wei; Nango, Eriko; Nakane, Takanori; Tanaka, Rie; Tono, Kensuke; Joti, Yasumasa; Iwata, So; Moraes, Isabel; Gati, Cornelius; Cherezov, Vadim.

In: IUCrJ, Vol. 6, 01.11.2019, p. 1106-1119.

Research output: Contribution to journalArticle

Ishchenko, A, Stauch, B, Han, GW, Batyuk, A, Shiriaeva, A, Li, C, Zatsepin, N, Weierstall, U, Liu, W, Nango, E, Nakane, T, Tanaka, R, Tono, K, Joti, Y, Iwata, S, Moraes, I, Gati, C & Cherezov, V 2019, 'Toward G protein-coupled receptor structure-based drug design using X-ray lasers', IUCrJ, vol. 6, pp. 1106-1119. https://doi.org/10.1107/S2052252519013137
Ishchenko A, Stauch B, Han GW, Batyuk A, Shiriaeva A, Li C et al. Toward G protein-coupled receptor structure-based drug design using X-ray lasers. IUCrJ. 2019 Nov 1;6:1106-1119. https://doi.org/10.1107/S2052252519013137
Ishchenko, Andrii ; Stauch, Benjamin ; Han, Gye Won ; Batyuk, Alexander ; Shiriaeva, Anna ; Li, Chufeng ; Zatsepin, Nadia ; Weierstall, Uwe ; Liu, Wei ; Nango, Eriko ; Nakane, Takanori ; Tanaka, Rie ; Tono, Kensuke ; Joti, Yasumasa ; Iwata, So ; Moraes, Isabel ; Gati, Cornelius ; Cherezov, Vadim. / Toward G protein-coupled receptor structure-based drug design using X-ray lasers. In: IUCrJ. 2019 ; Vol. 6. pp. 1106-1119.
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