The Pseudomonas aeruginosa PAO1 gene collection

Joshua LaBaer, QingQing Q. Qiu, Anukanth Anumanthan, Wenhong Mar, Dongmei Zuo, T. V S Murthy, Helen Taycher, Allison Halleck, Eugenie Hainsworth, Stephen Lory, Leonardo Brizuela

Research output: Contribution to journalArticle

64 Citations (Scopus)

Abstract

Pseudomonas aeruginosa, a common inhabitant of soil and water, is an opportunistic pathogen of growing clinical relevance. Its genome, one of the largest among bacteria [5570 open reading frames (ORFs)] approaches that of simple eukaryotes. We have constructed a comprehensive gene collection for this organism utilizing the annotated genome of P. aeruginosa PAO1 and a highly automated and laboratory information management system (LIMS)-supported production line. All the individual ORFs have been successfully PCR-amplified and cloned into a recombination-based cloning system. We have isolated and archived four independent isolates of each individual ORF. Full sequence analysis of the first isolate for one-third of the ORFs in the collection has been completed. We used two sets of genes from this repository for high-throughput expression and purification of recombinant proteins in different systems. The purified proteins have been used to set up biochemical and immunological assays directed towards characterization of histidine kinases and identification of bacterial proteins involved in the immune response of cystic fibrosis patients. This gene repository provides a powerful tool for proteome- and genome-scale research of this organism, and the strategies adopted to generate this repository serve as a model for building clone sets for other bacteria.

Original languageEnglish (US)
Pages (from-to)2190-2200
Number of pages11
JournalGenome Research
Volume14
Issue number10 B
StatePublished - Oct 2004
Externally publishedYes

Fingerprint

Pseudomonas aeruginosa
Open Reading Frames
Genome
Genes
Clinical Laboratory Information Systems
Bacteria
Information Management
Bacterial Proteins
Proteome
Eukaryota
Recombinant Proteins
Cystic Fibrosis
Genetic Recombination
Sequence Analysis
Organism Cloning
Soil
Clone Cells
Polymerase Chain Reaction
Water
Research

ASJC Scopus subject areas

  • Genetics

Cite this

LaBaer, J., Qiu, Q. Q., Anumanthan, A., Mar, W., Zuo, D., Murthy, T. V. S., ... Brizuela, L. (2004). The Pseudomonas aeruginosa PAO1 gene collection. Genome Research, 14(10 B), 2190-2200.

The Pseudomonas aeruginosa PAO1 gene collection. / LaBaer, Joshua; Qiu, QingQing Q.; Anumanthan, Anukanth; Mar, Wenhong; Zuo, Dongmei; Murthy, T. V S; Taycher, Helen; Halleck, Allison; Hainsworth, Eugenie; Lory, Stephen; Brizuela, Leonardo.

In: Genome Research, Vol. 14, No. 10 B, 10.2004, p. 2190-2200.

Research output: Contribution to journalArticle

LaBaer, J, Qiu, QQ, Anumanthan, A, Mar, W, Zuo, D, Murthy, TVS, Taycher, H, Halleck, A, Hainsworth, E, Lory, S & Brizuela, L 2004, 'The Pseudomonas aeruginosa PAO1 gene collection', Genome Research, vol. 14, no. 10 B, pp. 2190-2200.
LaBaer J, Qiu QQ, Anumanthan A, Mar W, Zuo D, Murthy TVS et al. The Pseudomonas aeruginosa PAO1 gene collection. Genome Research. 2004 Oct;14(10 B):2190-2200.
LaBaer, Joshua ; Qiu, QingQing Q. ; Anumanthan, Anukanth ; Mar, Wenhong ; Zuo, Dongmei ; Murthy, T. V S ; Taycher, Helen ; Halleck, Allison ; Hainsworth, Eugenie ; Lory, Stephen ; Brizuela, Leonardo. / The Pseudomonas aeruginosa PAO1 gene collection. In: Genome Research. 2004 ; Vol. 14, No. 10 B. pp. 2190-2200.
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