The protein structure initiative structural genomics knowledgebase

Helen M. Berman; John D. Westbrook; Margaret J. Gabanyi; Wendy Tao; Raship Shah; Andrei Kouranov; Torsten Schwede; Konstantin Arnold; Florian Kiefer; Lorenza Bordoli; Jürgen Kopp; Michael Podvinec; Paul D. Adams; Lester G. Carter; Wladek Minor; Rajesh Nair; Joshua La Baer

doi:10.1093/nar/gkn790

The protein structure initiative structural genomics knowledgebase

Helen M. Berman, John D. Westbrook, Margaret J. Gabanyi, Wendy Tao, Raship Shah, Andrei Kouranov, Torsten Schwede, Konstantin Arnold, Florian Kiefer, Lorenza Bordoli, Jürgen Kopp, Michael Podvinec, Paul D. Adams, Lester G. Carter, Wladek Minor, Rajesh Nair, Joshua La Baer

Research output: Contribution to journal › Article › peer-review

86 Scopus citations

Abstract

The Protein Structure Initiative Structural Genomics Knowledgebase (PSI SGKB, http://kb.psi-structuralgenomics.org) has been created to turn the products of the PSI structural genomics effort into knowledge that can be used by the biological research community to understand living systems and disease. This resource provides central access to structures in the Protein Data Bank (PDB), along with functional annotations, associated homology models, worldwide protein target tracking information, available protocols and the potential to obtain DNA materials for many of the targets. It also offers the ability to search all of the structural and methodological publications and the innovative technologies that were catalyzed by the PSI's high-throughput research efforts. In collaboration with the Nature Publishing Group, the PSI SGKB provides a research library, editorials about new research advances, news and an events calendar to present a broader view of structural biology and structural genomics. By making these resources freely available, the PSI SGKB serves as a bridge to connect the structural biology and the greater biomedical communities.

Original language	English (US)
Pages (from-to)	D365-D368
Journal	Nucleic acids research
Volume	37
Issue number	SUPPL. 1
DOIs	https://doi.org/10.1093/nar/gkn790
State	Published - 2009
Externally published	Yes

ASJC Scopus subject areas

Genetics

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10.1093/nar/gkn790

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Berman, H. M., Westbrook, J. D., Gabanyi, M. J., Tao, W., Shah, R., Kouranov, A., Schwede, T., Arnold, K., Kiefer, F., Bordoli, L., Kopp, J., Podvinec, M., Adams, P. D., Carter, L. G., Minor, W., Nair, R., & Baer, J. L. (2009). The protein structure initiative structural genomics knowledgebase. Nucleic acids research, 37(SUPPL. 1), D365-D368. https://doi.org/10.1093/nar/gkn790

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abstract = "The Protein Structure Initiative Structural Genomics Knowledgebase (PSI SGKB, http://kb.psi-structuralgenomics.org) has been created to turn the products of the PSI structural genomics effort into knowledge that can be used by the biological research community to understand living systems and disease. This resource provides central access to structures in the Protein Data Bank (PDB), along with functional annotations, associated homology models, worldwide protein target tracking information, available protocols and the potential to obtain DNA materials for many of the targets. It also offers the ability to search all of the structural and methodological publications and the innovative technologies that were catalyzed by the PSI's high-throughput research efforts. In collaboration with the Nature Publishing Group, the PSI SGKB provides a research library, editorials about new research advances, news and an events calendar to present a broader view of structural biology and structural genomics. By making these resources freely available, the PSI SGKB serves as a bridge to connect the structural biology and the greater biomedical communities.",

author = "Berman, {Helen M.} and Westbrook, {John D.} and Gabanyi, {Margaret J.} and Wendy Tao and Raship Shah and Andrei Kouranov and Torsten Schwede and Konstantin Arnold and Florian Kiefer and Lorenza Bordoli and J{\"u}rgen Kopp and Michael Podvinec and Adams, {Paul D.} and Carter, {Lester G.} and Wladek Minor and Rajesh Nair and Baer, {Joshua La}",

note = "Funding Information: National Institute of General Medical Sciences. Funding for open access charge: The PSI SGKB is supported by the National Institutes of Health (NIH) as a sub-grant under Prime Agreement Award Number: 3U54GM074958-04S1.",

year = "2009",

doi = "10.1093/nar/gkn790",

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volume = "37",

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AU - Nair, Rajesh

AU - Baer, Joshua La

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The protein structure initiative structural genomics knowledgebase

Abstract

ASJC Scopus subject areas

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