The oxDNA Coarse-Grained Model as a Tool to Simulate DNA Origami

Jonathan P.K. Doye, Hannah Fowler, Domen Prešern, Joakim Bohlin, Lorenzo Rovigatti, Flavio Romano, Petr Šulc, Chak Kui Wong, Ard A. Louis, John S. Schreck, Megan C. Engel, Michael Matthies, Erik Benson, Erik Poppleton, Benedict E.K. Snodin

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Scopus citations

Abstract

This chapter introduces how to run molecular dynamics simulations for DNA origami using the oxDNA coarse-grained model.

Original languageEnglish (US)
Title of host publicationMethods in Molecular Biology
PublisherHumana Press Inc.
Pages93-112
Number of pages20
DOIs
StatePublished - 2023
Externally publishedYes

Publication series

NameMethods in Molecular Biology
Volume2639
ISSN (Print)1064-3745
ISSN (Electronic)1940-6029

Keywords

  • Coarse-grained models
  • DNA origami
  • Molecular simulation

ASJC Scopus subject areas

  • Molecular Biology
  • Genetics

Fingerprint

Dive into the research topics of 'The oxDNA Coarse-Grained Model as a Tool to Simulate DNA Origami'. Together they form a unique fingerprint.

Cite this