Surveillance of rhinovirus diversity among a university community identifies multiple types from all three species including an unassigned rhinovirus A genotype

Temitope O.C. Faleye; Amir Elyaderani; Peter Skidmore; Sangeet Adhikari; Abriana Smith; Nicole Kaiser; Helen Sandrolini; Sarah Finnerty; Rolf U. Halden; Arvind Varsani; Matthew Scotch

doi:10.1111/irv.13057

Surveillance of rhinovirus diversity among a university community identifies multiple types from all three species including an unassigned rhinovirus A genotype

Temitope O.C. Faleye, Amir Elyaderani, Peter Skidmore, Sangeet Adhikari, Abriana Smith, Nicole Kaiser, Helen Sandrolini, Sarah Finnerty, Rolf U. Halden, Arvind Varsani, Matthew Scotch

Research output: Contribution to journal › Article › peer-review

Abstract

We determine the presence and diversity of rhinoviruses in nasopharyngeal swab samples from 248 individuals who presented with influenza-like illness (ILI) at a university clinic in the Southwest United States between October 1, 2020 and March 31, 2021. We identify at least 13 rhinovirus genotypes (A11, A22, A23, A25, A67, A101, B6, B79, C1, C17, C36, and C56, as well a new genotype [AZ88**]) and 16 variants that contributed to the burden of ILI in the community. We also describe the complete capsid protein gene of a member (AZ88**) of an unassigned rhinovirus A genotype.

Original language	English (US)
Article number	e13057
Journal	Influenza and other Respiratory Viruses
Volume	17
Issue number	1
DOIs	https://doi.org/10.1111/irv.13057
State	Published - Jan 2023

Keywords

Southwestern United States
high-throughput nucleotide sequencing
population surveillance
rhinovirus
student health services

ASJC Scopus subject areas

Epidemiology
Pulmonary and Respiratory Medicine
Public Health, Environmental and Occupational Health
Infectious Diseases

Access to Document

10.1111/irv.13057

Cite this

Faleye, T. O. C., Elyaderani, A., Skidmore, P., Adhikari, S., Smith, A., Kaiser, N., Sandrolini, H., Finnerty, S., Halden, R. U., Varsani, A., & Scotch, M. (2023). Surveillance of rhinovirus diversity among a university community identifies multiple types from all three species including an unassigned rhinovirus A genotype. Influenza and other Respiratory Viruses, 17(1), Article e13057. https://doi.org/10.1111/irv.13057

Surveillance of rhinovirus diversity among a university community identifies multiple types from all three species including an unassigned rhinovirus A genotype. / Faleye, Temitope O.C.; Elyaderani, Amir; Skidmore, Peter et al.
In: Influenza and other Respiratory Viruses, Vol. 17, No. 1, e13057, 01.2023.

Research output: Contribution to journal › Article › peer-review

Faleye, TOC, Elyaderani, A, Skidmore, P, Adhikari, S, Smith, A, Kaiser, N, Sandrolini, H, Finnerty, S, Halden, RU , Varsani, A & Scotch, M 2023, 'Surveillance of rhinovirus diversity among a university community identifies multiple types from all three species including an unassigned rhinovirus A genotype', Influenza and other Respiratory Viruses, vol. 17, no. 1, e13057. https://doi.org/10.1111/irv.13057

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abstract = "We determine the presence and diversity of rhinoviruses in nasopharyngeal swab samples from 248 individuals who presented with influenza-like illness (ILI) at a university clinic in the Southwest United States between October 1, 2020 and March 31, 2021. We identify at least 13 rhinovirus genotypes (A11, A22, A23, A25, A67, A101, B6, B79, C1, C17, C36, and C56, as well a new genotype [AZ88**]) and 16 variants that contributed to the burden of ILI in the community. We also describe the complete capsid protein gene of a member (AZ88**) of an unassigned rhinovirus A genotype.",

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AU - Sandrolini, Helen

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Surveillance of rhinovirus diversity among a university community identifies multiple types from all three species including an unassigned rhinovirus A genotype

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