TY - JOUR
T1 - Substrates elicit different patterns of intracellular signaling which in turn cause differences in cell adhesion
AU - Shankarraman, Venkat
AU - Shah, Miti M.
AU - Caplan, Michael
N1 - Funding Information:
This research was supported by the NIH (R21 EB004386), the American Heart Association, and the Arizona Biomedical Research Commission (#0917). The authors thank Dr. Kevin Janes for generous assistance in helping us reproduce his kinase assay protocols, helping us learn to use the PLS Toolbox, and in assisting in experimental design. We also thank Dr. Christine Pauken who supervises our cell culture facility, Dr. Lawrence Mandarino for allowing us to use his scintillation counter, and Dr. Yung Chang for allowing us to use her FACScaliber.
PY - 2010/9
Y1 - 2010/9
N2 - Although intracellular signal transduction is relatively well understood, how the cells can distinguish among thousands of micro-environments is not. This study proposes that a systems level view of intracellular signaling is necessary to interpret differences in cell interactions with different substrates. Human umbilical vein endothelial cells were exposed to 10 substrates (9 adsorbed extracellular matrix proteins and uncoated polystyrene), and the activities of 4 intracellular signaling kinases were quantified for cells on each substrate as a function of time. Principal component analysis demonstrates that each substrate elicits a different pattern of signaling. Mean activity of the 4 kinases can distinguish 44 of 45 possible pair-wise comparisons among the substrates. Partial Least Squares Regression Analysis is used to hypothesize causal relationships between signaling activity and cell adhesion or β1-integrin expression. Inhibition studies generally confirm that ERK (extracellular signalrelated kinase) and JNK (c-Jun N-terminal kinase) cause increased adhesion and β1-integrin expression. Inhibition of IKK (IκB kinase), on the other hand, showed no statistically significant effect on β1-integrin expression and led to significant decreases in cell adhesion-confirming a causal link but opposite of the hypothesized relationship (that inhibition of IKK would increase adhesion).
AB - Although intracellular signal transduction is relatively well understood, how the cells can distinguish among thousands of micro-environments is not. This study proposes that a systems level view of intracellular signaling is necessary to interpret differences in cell interactions with different substrates. Human umbilical vein endothelial cells were exposed to 10 substrates (9 adsorbed extracellular matrix proteins and uncoated polystyrene), and the activities of 4 intracellular signaling kinases were quantified for cells on each substrate as a function of time. Principal component analysis demonstrates that each substrate elicits a different pattern of signaling. Mean activity of the 4 kinases can distinguish 44 of 45 possible pair-wise comparisons among the substrates. Partial Least Squares Regression Analysis is used to hypothesize causal relationships between signaling activity and cell adhesion or β1-integrin expression. Inhibition studies generally confirm that ERK (extracellular signalrelated kinase) and JNK (c-Jun N-terminal kinase) cause increased adhesion and β1-integrin expression. Inhibition of IKK (IκB kinase), on the other hand, showed no statistically significant effect on β1-integrin expression and led to significant decreases in cell adhesion-confirming a causal link but opposite of the hypothesized relationship (that inhibition of IKK would increase adhesion).
KW - Biocompatible materials
KW - Endothelial cells
KW - Extracellular matrix
KW - Least-squares analysis
KW - Principal component analysis
KW - Signal transduction
KW - Systems biology
UR - http://www.scopus.com/inward/record.url?scp=78651468750&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=78651468750&partnerID=8YFLogxK
U2 - 10.1007/s12195-010-0122-2
DO - 10.1007/s12195-010-0122-2
M3 - Article
AN - SCOPUS:78651468750
SN - 1865-5025
VL - 3
SP - 229
EP - 246
JO - Cellular and Molecular Bioengineering
JF - Cellular and Molecular Bioengineering
IS - 3
ER -