Resources for genetic management and genomics research on non-human primates at the National Primate Research Centers (NPRCs)

S. Kanthaswamy; J. P. Capitanio; C. J. Dubay; B. Ferguson; T. Folks; J. C. Ha; C. E. Hotchkiss; Z. P. Johnson; M. G. Katze; L. S. Kean; H. Michael Kubisch; S. Lank; L. A. Lyons; G. M. Miller; J. Nylander; D. H. O'Connor; R. E. Palermo; D. G. Smith; E. J. Vallender; R. W. Wiseman; J. Rogers

doi:10.1111/j.1600-0684.2009.00371.x

Resources for genetic management and genomics research on non-human primates at the National Primate Research Centers (NPRCs)

S. Kanthaswamy, J. P. Capitanio, C. J. Dubay, B. Ferguson, T. Folks, J. C. Ha, C. E. Hotchkiss, Z. P. Johnson, M. G. Katze, L. S. Kean, H. Michael Kubisch, S. Lank, L. A. Lyons, G. M. Miller, J. Nylander, D. H. O'Connor, R. E. Palermo, D. G. Smith, E. J. Vallender, R. W. WisemanJ. Rogers

Research output: Contribution to journal › Article › peer-review

26 Scopus citations

Abstract

The National Primate Research Centers (NPRCs) established Working Groups (WGs) for developing resources and mechanisms to facilitate collaborations among non-human primate (NHP) researchers. Here we report the progress of the Genome Banking and the Genetics and Genomics WGs in developing resources to advance the exchange, analysis and comparison of NHP genetic and genomic data across the NPRCs.The Genome Banking WG has established a National NHP DNA bank comprising 1250 DNA samples from unrelated animals and family trios from the 10 NHP species housed within the NPRC system. The Genetics and Genomics WG is developing SNP arrays that will provide a uniform, highly informative, efficient and low-cost method for rhesus and long-tailed macaque genotyping across the eight NPRCs. This WG is also establishing a Biomedical Informatics Research Network-based portal for shared bioinformatics resources including vital statistics, genotype and population data and information on the National NHP DNA bank.

Original language	English (US)
Pages (from-to)	17-23
Number of pages	7
Journal	Journal of Medical Primatology
Volume	38
Issue number	SUPPL. 1
DOIs	https://doi.org/10.1111/j.1600-0684.2009.00371.x
State	Published - Oct 2009
Externally published	Yes

Keywords

Ancestry estimation
Biomedical information research network
DNA bank
Databases
Genotype data
Information systems
Parentage testing
Population genetics
Single nucleotide polymorphisms
Web portal

ASJC Scopus subject areas

Animal Science and Zoology
General Veterinary

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Kanthaswamy, S., Capitanio, J. P., Dubay, C. J., Ferguson, B., Folks, T., Ha, J. C., Hotchkiss, C. E., Johnson, Z. P., Katze, M. G., Kean, L. S., Michael Kubisch, H., Lank, S., Lyons, L. A., Miller, G. M., Nylander, J., O'Connor, D. H., Palermo, R. E., Smith, D. G., Vallender, E. J., ... Rogers, J. (2009). Resources for genetic management and genomics research on non-human primates at the National Primate Research Centers (NPRCs). Journal of Medical Primatology, 38(SUPPL. 1), 17-23. https://doi.org/10.1111/j.1600-0684.2009.00371.x

Kanthaswamy, S, Capitanio, JP, Dubay, CJ, Ferguson, B, Folks, T, Ha, JC, Hotchkiss, CE, Johnson, ZP, Katze, MG, Kean, LS, Michael Kubisch, H, Lank, S, Lyons, LA, Miller, GM, Nylander, J, O'Connor, DH, Palermo, RE, Smith, DG, Vallender, EJ, Wiseman, RW & Rogers, J 2009, 'Resources for genetic management and genomics research on non-human primates at the National Primate Research Centers (NPRCs)', Journal of Medical Primatology, vol. 38, no. SUPPL. 1, pp. 17-23. https://doi.org/10.1111/j.1600-0684.2009.00371.x

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abstract = "The National Primate Research Centers (NPRCs) established Working Groups (WGs) for developing resources and mechanisms to facilitate collaborations among non-human primate (NHP) researchers. Here we report the progress of the Genome Banking and the Genetics and Genomics WGs in developing resources to advance the exchange, analysis and comparison of NHP genetic and genomic data across the NPRCs.The Genome Banking WG has established a National NHP DNA bank comprising 1250 DNA samples from unrelated animals and family trios from the 10 NHP species housed within the NPRC system. The Genetics and Genomics WG is developing SNP arrays that will provide a uniform, highly informative, efficient and low-cost method for rhesus and long-tailed macaque genotyping across the eight NPRCs. This WG is also establishing a Biomedical Informatics Research Network-based portal for shared bioinformatics resources including vital statistics, genotype and population data and information on the National NHP DNA bank.",

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AU - Ferguson, B.

AU - Folks, T.

AU - Ha, J. C.

AU - Hotchkiss, C. E.

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AU - Kean, L. S.

AU - Michael Kubisch, H.

AU - Lank, S.

AU - Lyons, L. A.

AU - Miller, G. M.

AU - Nylander, J.

AU - O'Connor, D. H.

AU - Palermo, R. E.

AU - Smith, D. G.

AU - Vallender, E. J.

AU - Wiseman, R. W.

AU - Rogers, J.

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KW - Single nucleotide polymorphisms

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Resources for genetic management and genomics research on non-human primates at the National Primate Research Centers (NPRCs)

Abstract

Keywords

ASJC Scopus subject areas

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