Recent advances and emerging applications in text and data mining for biomedical discovery

Graciela H. Gonzalez, Tasnia Tahsin, Britton C. Goodale, Anna C. Greene, Casey S. Greene

Research output: Contribution to journalArticle

49 Citations (Scopus)

Abstract

Precision medicine will revolutionize the way we treat and prevent disease. A major barrier to the implementation of precision medicine that clinicians and translational scientists face is understanding the underlying mechanisms of disease. We are starting to address this challenge through automatic approaches for information extraction, representation and analysis. Recent advances in text and data mining have been applied to a broad spectrum of key biomedical questions in genomics, pharmacogenomics and other fields. We present an overview of the fundamental methods for text and data mining, as well as recent advances and emerging applications toward precision medicine.

Original languageEnglish (US)
Article numberbbv087
Pages (from-to)33-42
Number of pages10
JournalBriefings in Bioinformatics
Volume17
Issue number1
DOIs
StatePublished - Jan 1 2016

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Data Mining
Precision Medicine
Medicine
Data mining
Information Storage and Retrieval
Pharmacogenetics
Genomics

Keywords

  • Biomedical discovery
  • Data mining
  • Gene prioritization
  • Pharmacogenomics
  • Text mining
  • Toxicology

ASJC Scopus subject areas

  • Molecular Biology
  • Information Systems

Cite this

Gonzalez, G. H., Tahsin, T., Goodale, B. C., Greene, A. C., & Greene, C. S. (2016). Recent advances and emerging applications in text and data mining for biomedical discovery. Briefings in Bioinformatics, 17(1), 33-42. [bbv087]. https://doi.org/10.1093/bib/bbv087

Recent advances and emerging applications in text and data mining for biomedical discovery. / Gonzalez, Graciela H.; Tahsin, Tasnia; Goodale, Britton C.; Greene, Anna C.; Greene, Casey S.

In: Briefings in Bioinformatics, Vol. 17, No. 1, bbv087, 01.01.2016, p. 33-42.

Research output: Contribution to journalArticle

Gonzalez, GH, Tahsin, T, Goodale, BC, Greene, AC & Greene, CS 2016, 'Recent advances and emerging applications in text and data mining for biomedical discovery', Briefings in Bioinformatics, vol. 17, no. 1, bbv087, pp. 33-42. https://doi.org/10.1093/bib/bbv087
Gonzalez, Graciela H. ; Tahsin, Tasnia ; Goodale, Britton C. ; Greene, Anna C. ; Greene, Casey S. / Recent advances and emerging applications in text and data mining for biomedical discovery. In: Briefings in Bioinformatics. 2016 ; Vol. 17, No. 1. pp. 33-42.
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