POPcorn: An Online resource providing access to distributed and diverse maize project data

Ethalinda K.S. Cannon; Scott M. Birkett; Bremen L. Braun; Sateesh Kodavali; Douglas M. Jennewein; Alper Yilmaz; Valentin Antonescu; Corina Antonescu; Lisa C. Harper; Jack M. Gardiner; Mary L. Schaeffer; Darwin A. Campbell; Carson M. Andorf; Destri Andorf; Damon Lisch; Karen E. Koch; Donald R. McCarty; John Quackenbush; Erich Grotewold; Carol M. Lushbough; Taner Z. Sen; Carolyn J. Lawrence

doi:10.1155/2011/923035

POPcorn: An Online resource providing access to distributed and diverse maize project data

Ethalinda K.S. Cannon, Scott M. Birkett, Bremen L. Braun, Sateesh Kodavali, Douglas M. Jennewein, Alper Yilmaz, Valentin Antonescu, Corina Antonescu, Lisa C. Harper, Jack M. Gardiner, Mary L. Schaeffer, Darwin A. Campbell, Carson M. Andorf, Destri Andorf, Damon Lisch, Karen E. Koch, Donald R. McCarty, John Quackenbush, Erich Grotewold, Carol M. LushboughTaner Z. Sen, Carolyn J. Lawrence

Research output: Contribution to journal › Article › peer-review

21 Scopus citations

Abstract

The purpose of the online resource presented here, POPcorn (Project Portal for corn), is to enhance accessibility of maize genetic and genomic resources for plant biologists. Currently, many online locations are difficult to find, some are best searched independently, and individual project websites often degrade over time - sometimes disappearing entirely. The POPcorn site makes available (1) a centralized, web-accessible resource to search and browse descriptions of ongoing maize genomics projects, (2) a single, stand-alone tool that uses web Services and minimal data warehousing to search for sequence matches in online resources of diverse offsite projects, and (3) a set of tools that enables researchers to migrate their data to the long-term model organism database for maize genetic and genomic information: MaizeGDB. Examples demonstrating POPcorn's utility are provided herein.

Original language	English (US)
Article number	923035
Journal	International Journal of Plant Genomics
Volume	2011
DOIs	https://doi.org/10.1155/2011/923035
State	Published - 2011
Externally published	Yes

ASJC Scopus subject areas

Genetics
Plant Science

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Cannon, E. K. S., Birkett, S. M., Braun, B. L., Kodavali, S., Jennewein, D. M., Yilmaz, A., Antonescu, V., Antonescu, C., Harper, L. C., Gardiner, J. M., Schaeffer, M. L., Campbell, D. A., Andorf, C. M., Andorf, D., Lisch, D., Koch, K. E., McCarty, D. R., Quackenbush, J., Grotewold, E., ... Lawrence, C. J. (2011). POPcorn: An Online resource providing access to distributed and diverse maize project data. International Journal of Plant Genomics, 2011, Article 923035. https://doi.org/10.1155/2011/923035

Cannon, EKS, Birkett, SM, Braun, BL, Kodavali, S, Jennewein, DM, Yilmaz, A, Antonescu, V, Antonescu, C, Harper, LC, Gardiner, JM, Schaeffer, ML, Campbell, DA, Andorf, CM, Andorf, D, Lisch, D, Koch, KE, McCarty, DR, Quackenbush, J, Grotewold, E, Lushbough, CM, Sen, TZ & Lawrence, CJ 2011, 'POPcorn: An Online resource providing access to distributed and diverse maize project data', International Journal of Plant Genomics, vol. 2011, 923035. https://doi.org/10.1155/2011/923035

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title = "POPcorn: An Online resource providing access to distributed and diverse maize project data",

abstract = "The purpose of the online resource presented here, POPcorn (Project Portal for corn), is to enhance accessibility of maize genetic and genomic resources for plant biologists. Currently, many online locations are difficult to find, some are best searched independently, and individual project websites often degrade over time - sometimes disappearing entirely. The POPcorn site makes available (1) a centralized, web-accessible resource to search and browse descriptions of ongoing maize genomics projects, (2) a single, stand-alone tool that uses web Services and minimal data warehousing to search for sequence matches in online resources of diverse offsite projects, and (3) a set of tools that enables researchers to migrate their data to the long-term model organism database for maize genetic and genomic information: MaizeGDB. Examples demonstrating POPcorn's utility are provided herein.",

author = "Cannon, {Ethalinda K.S.} and Birkett, {Scott M.} and Braun, {Bremen L.} and Sateesh Kodavali and Jennewein, {Douglas M.} and Alper Yilmaz and Valentin Antonescu and Corina Antonescu and Harper, {Lisa C.} and Gardiner, {Jack M.} and Schaeffer, {Mary L.} and Campbell, {Darwin A.} and Andorf, {Carson M.} and Destri Andorf and Damon Lisch and Koch, {Karen E.} and McCarty, {Donald R.} and John Quackenbush and Erich Grotewold and Lushbough, {Carol M.} and Sen, {Taner Z.} and Lawrence, {Carolyn J.}",

year = "2011",

doi = "10.1155/2011/923035",

language = "English (US)",

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AU - Birkett, Scott M.

AU - Braun, Bremen L.

AU - Kodavali, Sateesh

AU - Jennewein, Douglas M.

AU - Yilmaz, Alper

AU - Antonescu, Valentin

AU - Antonescu, Corina

AU - Harper, Lisa C.

AU - Gardiner, Jack M.

AU - Schaeffer, Mary L.

AU - Campbell, Darwin A.

AU - Andorf, Carson M.

AU - Andorf, Destri

AU - Lisch, Damon

AU - Koch, Karen E.

AU - McCarty, Donald R.

AU - Quackenbush, John

AU - Grotewold, Erich

AU - Lushbough, Carol M.

AU - Sen, Taner Z.

AU - Lawrence, Carolyn J.

PY - 2011

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AB - The purpose of the online resource presented here, POPcorn (Project Portal for corn), is to enhance accessibility of maize genetic and genomic resources for plant biologists. Currently, many online locations are difficult to find, some are best searched independently, and individual project websites often degrade over time - sometimes disappearing entirely. The POPcorn site makes available (1) a centralized, web-accessible resource to search and browse descriptions of ongoing maize genomics projects, (2) a single, stand-alone tool that uses web Services and minimal data warehousing to search for sequence matches in online resources of diverse offsite projects, and (3) a set of tools that enables researchers to migrate their data to the long-term model organism database for maize genetic and genomic information: MaizeGDB. Examples demonstrating POPcorn's utility are provided herein.

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POPcorn: An Online resource providing access to distributed and diverse maize project data

Abstract

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