New approaches for delineating n-dimensional hypervolumes

Benjamin Blonder, Cecina Babich Morrow, Brian Maitner, David J. Harris, Christine Lamanna, Cyrille Violle, Brian J. Enquist, Andrew J. Kerkhoff

Research output: Contribution to journalArticle

38 Scopus citations

Abstract

Hutchinson's n-dimensional hypervolume concept underlies many applications in contemporary ecology and evolutionary biology. Estimating hypervolumes from sampled data has been an ongoing challenge due to conceptual and computational issues. We present new algorithms for delineating the boundaries and probability density within n-dimensional hypervolumes. The methods produce smooth boundaries that can fit data either more loosely (Gaussian kernel density estimation) or more tightly (one-classification via support vector machine). Further, the algorithms can accept abundance-weighted data, and the resulting hypervolumes can be given a probabilistic interpretation and projected into geographic space. We demonstrate the properties of these methods on a large dataset that characterises the functional traits and geographic distribution of thousands of plants. The methods are available in version ≥2.0.7 of the hypervolume r package. These new algorithms provide: (i) a more robust approach for delineating the shape and density of n-dimensional hypervolumes; (ii) more efficient performance on large and high-dimensional datasets; and (iii) improved measures of functional diversity and environmental niche breadth.

Original languageEnglish (US)
Pages (from-to)305-319
Number of pages15
JournalMethods in Ecology and Evolution
Volume9
Issue number2
DOIs
StatePublished - Feb 1 2018

Keywords

  • functional diversity
  • functional space
  • hypervolume
  • kernel density estimation
  • niche
  • niche modelling
  • support vector machine

ASJC Scopus subject areas

  • Ecology, Evolution, Behavior and Systematics
  • Ecological Modeling

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    Blonder, B., Morrow, C. B., Maitner, B., Harris, D. J., Lamanna, C., Violle, C., Enquist, B. J., & Kerkhoff, A. J. (2018). New approaches for delineating n-dimensional hypervolumes. Methods in Ecology and Evolution, 9(2), 305-319. https://doi.org/10.1111/2041-210X.12865