TY - JOUR
T1 - Nanobase.org
T2 - A repository for DNA and RNA nanostructures
AU - Poppleton, Erik
AU - Mallya, Aatmik
AU - Dey, Swarup
AU - Joseph, Joel
AU - Šulc, Petr
N1 - Publisher Copyright:
© 2022 The Author(s). Published by Oxford University Press on behalf of Nucleic Acids Research.
PY - 2022/1/7
Y1 - 2022/1/7
N2 - We introduce a new online database of nucleic acid nanostructures for the field of DNA and RNA nanotechnology. The database implements an upload interface, searching and database browsing. Each deposited nanostructures includes an image of the nanostructure, design file, an optional 3D view, and additional metadata such as experimental data, protocol or literature reference. The database accepts nanostructures in any preferred format used by the uploader for the nanostructure design. We further provide a set of conversion tools that encourage design file conversion into common formats (oxDNA and PDB) that can be used for setting up simulations, interactive editing or 3D visualization. The aim of the repository is to provide to the DNA/RNA nanotechnology community a resource for sharing their designs for further reuse in other systems and also to function as an archive of the designs that have been achieved in the field so far. Nanobase.org is available at https://nanobase.org/.
AB - We introduce a new online database of nucleic acid nanostructures for the field of DNA and RNA nanotechnology. The database implements an upload interface, searching and database browsing. Each deposited nanostructures includes an image of the nanostructure, design file, an optional 3D view, and additional metadata such as experimental data, protocol or literature reference. The database accepts nanostructures in any preferred format used by the uploader for the nanostructure design. We further provide a set of conversion tools that encourage design file conversion into common formats (oxDNA and PDB) that can be used for setting up simulations, interactive editing or 3D visualization. The aim of the repository is to provide to the DNA/RNA nanotechnology community a resource for sharing their designs for further reuse in other systems and also to function as an archive of the designs that have been achieved in the field so far. Nanobase.org is available at https://nanobase.org/.
UR - http://www.scopus.com/inward/record.url?scp=85123387813&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=85123387813&partnerID=8YFLogxK
U2 - 10.1093/nar/gkab1000
DO - 10.1093/nar/gkab1000
M3 - Article
C2 - 34747480
AN - SCOPUS:85123387813
SN - 0305-1048
VL - 50
SP - D246-D252
JO - Nucleic acids research
JF - Nucleic acids research
IS - D1
ER -