Minimum information about an uncultivated virus genome (MIUVIG)

Simon Roux, Evelien M. Adriaenssens, Bas E. Dutilh, Eugene V. Koonin, Andrew M. Kropinski, Mart Krupovic, Jens H. Kuhn, Rob Lavigne, J. Rodney Brister, Arvind Varsani, Clara Amid, Ramy K. Aziz, Seth R. Bordenstein, Peer Bork, Mya Breitbart, Guy R. Cochrane, Rebecca A. Daly, Christelle Desnues, Melissa B. Duhaime, Joanne B. EmersonFrançois Enault, Jed A. Fuhrman, Pascal Hingamp, Philip Hugenholtz, Bonnie L. Hurwitz, Natalia N. Ivanova, Jessica M. Labonté, Kyung Bum Lee, Rex R. Malmstrom, Manuel Martinez-Garcia, Ilene Karsch Mizrachi, Hiroyuki Ogata, David Páez-Espino, Marie Agnès Petit, Catherine Putonti, Thomas Rattei, Alejandro Reyes, Francisco Rodriguez-Valera, Karyna Rosario, Lynn Schriml, Frederik Schulz, Grieg F. Steward, Matthew B. Sullivan, Shinichi Sunagawa, Curtis A. Suttle, Ben Temperton, Susannah G. Tringe, Rebecca Vega Thurber, Nicole S. Webster, Katrine L. Whiteson, Steven W. Wilhelm, K. Eric Wommack, Tanja Woyke, Kelly C. Wrighton, Pelin Yilmaz, Takashi Yoshida, Mark J. Young, Natalya Yutin, Lisa Zeigler Allen, Nikos C. Kyrpides, Emiley A. Eloe-Fadrosh

Research output: Contribution to journalArticle

11 Citations (Scopus)

Abstract

We present an extension of the Minimum Information about any (x) Sequence (MIxS) standard for reporting sequences of uncultivated virus genomes. Minimum Information about an Uncultivated Virus Genome (MIUViG) standards were developed within the Genomic Standards Consortium framework and include virus origin, genome quality, genome annotation, taxonomic classification, biogeographic distribution and in silico host prediction. Community-wide adoption of MIUViG standards, which complement the Minimum Information about a Single Amplified Genome (MISAG) and Metagenome-Assembled Genome (MIMAG) standards for uncultivated bacteria and archaea, will improve the reporting of uncultivated virus genomes in public databases. In turn, this should enable more robust comparative studies and a systematic exploration of the global virosphere.

Original languageEnglish (US)
Pages (from-to)29-37
Number of pages9
JournalNature biotechnology
Volume37
Issue number1
DOIs
StatePublished - Jan 1 2019

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Viruses
Genes
Genome
Metagenome
Archaea
Computer Simulation
Bacteria
Databases

ASJC Scopus subject areas

  • Biotechnology
  • Bioengineering
  • Applied Microbiology and Biotechnology
  • Molecular Medicine
  • Biomedical Engineering

Cite this

Roux, S., Adriaenssens, E. M., Dutilh, B. E., Koonin, E. V., Kropinski, A. M., Krupovic, M., ... Eloe-Fadrosh, E. A. (2019). Minimum information about an uncultivated virus genome (MIUVIG). Nature biotechnology, 37(1), 29-37. https://doi.org/10.1038/nbt.4306

Minimum information about an uncultivated virus genome (MIUVIG). / Roux, Simon; Adriaenssens, Evelien M.; Dutilh, Bas E.; Koonin, Eugene V.; Kropinski, Andrew M.; Krupovic, Mart; Kuhn, Jens H.; Lavigne, Rob; Brister, J. Rodney; Varsani, Arvind; Amid, Clara; Aziz, Ramy K.; Bordenstein, Seth R.; Bork, Peer; Breitbart, Mya; Cochrane, Guy R.; Daly, Rebecca A.; Desnues, Christelle; Duhaime, Melissa B.; Emerson, Joanne B.; Enault, François; Fuhrman, Jed A.; Hingamp, Pascal; Hugenholtz, Philip; Hurwitz, Bonnie L.; Ivanova, Natalia N.; Labonté, Jessica M.; Lee, Kyung Bum; Malmstrom, Rex R.; Martinez-Garcia, Manuel; Mizrachi, Ilene Karsch; Ogata, Hiroyuki; Páez-Espino, David; Petit, Marie Agnès; Putonti, Catherine; Rattei, Thomas; Reyes, Alejandro; Rodriguez-Valera, Francisco; Rosario, Karyna; Schriml, Lynn; Schulz, Frederik; Steward, Grieg F.; Sullivan, Matthew B.; Sunagawa, Shinichi; Suttle, Curtis A.; Temperton, Ben; Tringe, Susannah G.; Thurber, Rebecca Vega; Webster, Nicole S.; Whiteson, Katrine L.; Wilhelm, Steven W.; Wommack, K. Eric; Woyke, Tanja; Wrighton, Kelly C.; Yilmaz, Pelin; Yoshida, Takashi; Young, Mark J.; Yutin, Natalya; Allen, Lisa Zeigler; Kyrpides, Nikos C.; Eloe-Fadrosh, Emiley A.

In: Nature biotechnology, Vol. 37, No. 1, 01.01.2019, p. 29-37.

Research output: Contribution to journalArticle

Roux, S, Adriaenssens, EM, Dutilh, BE, Koonin, EV, Kropinski, AM, Krupovic, M, Kuhn, JH, Lavigne, R, Brister, JR, Varsani, A, Amid, C, Aziz, RK, Bordenstein, SR, Bork, P, Breitbart, M, Cochrane, GR, Daly, RA, Desnues, C, Duhaime, MB, Emerson, JB, Enault, F, Fuhrman, JA, Hingamp, P, Hugenholtz, P, Hurwitz, BL, Ivanova, NN, Labonté, JM, Lee, KB, Malmstrom, RR, Martinez-Garcia, M, Mizrachi, IK, Ogata, H, Páez-Espino, D, Petit, MA, Putonti, C, Rattei, T, Reyes, A, Rodriguez-Valera, F, Rosario, K, Schriml, L, Schulz, F, Steward, GF, Sullivan, MB, Sunagawa, S, Suttle, CA, Temperton, B, Tringe, SG, Thurber, RV, Webster, NS, Whiteson, KL, Wilhelm, SW, Wommack, KE, Woyke, T, Wrighton, KC, Yilmaz, P, Yoshida, T, Young, MJ, Yutin, N, Allen, LZ, Kyrpides, NC & Eloe-Fadrosh, EA 2019, 'Minimum information about an uncultivated virus genome (MIUVIG)', Nature biotechnology, vol. 37, no. 1, pp. 29-37. https://doi.org/10.1038/nbt.4306
Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M et al. Minimum information about an uncultivated virus genome (MIUVIG). Nature biotechnology. 2019 Jan 1;37(1):29-37. https://doi.org/10.1038/nbt.4306
Roux, Simon ; Adriaenssens, Evelien M. ; Dutilh, Bas E. ; Koonin, Eugene V. ; Kropinski, Andrew M. ; Krupovic, Mart ; Kuhn, Jens H. ; Lavigne, Rob ; Brister, J. Rodney ; Varsani, Arvind ; Amid, Clara ; Aziz, Ramy K. ; Bordenstein, Seth R. ; Bork, Peer ; Breitbart, Mya ; Cochrane, Guy R. ; Daly, Rebecca A. ; Desnues, Christelle ; Duhaime, Melissa B. ; Emerson, Joanne B. ; Enault, François ; Fuhrman, Jed A. ; Hingamp, Pascal ; Hugenholtz, Philip ; Hurwitz, Bonnie L. ; Ivanova, Natalia N. ; Labonté, Jessica M. ; Lee, Kyung Bum ; Malmstrom, Rex R. ; Martinez-Garcia, Manuel ; Mizrachi, Ilene Karsch ; Ogata, Hiroyuki ; Páez-Espino, David ; Petit, Marie Agnès ; Putonti, Catherine ; Rattei, Thomas ; Reyes, Alejandro ; Rodriguez-Valera, Francisco ; Rosario, Karyna ; Schriml, Lynn ; Schulz, Frederik ; Steward, Grieg F. ; Sullivan, Matthew B. ; Sunagawa, Shinichi ; Suttle, Curtis A. ; Temperton, Ben ; Tringe, Susannah G. ; Thurber, Rebecca Vega ; Webster, Nicole S. ; Whiteson, Katrine L. ; Wilhelm, Steven W. ; Wommack, K. Eric ; Woyke, Tanja ; Wrighton, Kelly C. ; Yilmaz, Pelin ; Yoshida, Takashi ; Young, Mark J. ; Yutin, Natalya ; Allen, Lisa Zeigler ; Kyrpides, Nikos C. ; Eloe-Fadrosh, Emiley A. / Minimum information about an uncultivated virus genome (MIUVIG). In: Nature biotechnology. 2019 ; Vol. 37, No. 1. pp. 29-37.
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