Integrating genetic and network analysis to characterize genes related to mouse weight

Anatole Ghazalpour, Sudheer Doss, Bin Zhang, Susanna Wang, Christopher Plaisier, Ruth Castellanos, Alec Brozell, Eric E. Schadt, Thomas A. Drake, Aidons J. Lusis, Steve Horvath

Research output: Contribution to journalArticle

251 Citations (Scopus)

Abstract

Systems biology approaches that are based on the genetics of gene expression have been fruitful in identifying genetic regulatory loci related to complex traits. We use microarray and genetic marker data from an F2 mouse intercross to examine the large-scale organization of the gene co-expression network in liver, and annotate several gene modules in terms of 22 physiological traits. We identify chromosomal loci (referred to as module quantitative trait loci, mQTL) that perturb the modules and describe a novel approach that integrates network properties with genetic marker information to model gene/trait relationships. Specifically, using the mQTL and the intramodular connectivity of a body weight-related module, we describe which factors determine the relationship between gene expression profiles and weight. Our approach results in the identification of genetic targets that influence gene modules (pathways) that are related to the clinical phenotypes of interest.

Original languageEnglish (US)
Pages (from-to)1182-1192
Number of pages11
JournalPLoS Genetics
Volume2
Issue number8
DOIs
StatePublished - Sep 4 2006
Externally publishedYes

Fingerprint

Gene Regulatory Networks
Quantitative Trait Loci
network analysis
genetic analysis
Genetic Markers
Gene Expression
Weights and Measures
Genetic Loci
Systems Biology
gene
quantitative trait loci
mice
genetic marker
Transcriptome
Genes
gene expression
loci
genetic markers
genes
Body Weight

ASJC Scopus subject areas

  • Ecology, Evolution, Behavior and Systematics
  • Molecular Biology
  • Genetics
  • Genetics(clinical)
  • Cancer Research

Cite this

Ghazalpour, A., Doss, S., Zhang, B., Wang, S., Plaisier, C., Castellanos, R., ... Horvath, S. (2006). Integrating genetic and network analysis to characterize genes related to mouse weight. PLoS Genetics, 2(8), 1182-1192. https://doi.org/10.1371/journal.pgen.0020130

Integrating genetic and network analysis to characterize genes related to mouse weight. / Ghazalpour, Anatole; Doss, Sudheer; Zhang, Bin; Wang, Susanna; Plaisier, Christopher; Castellanos, Ruth; Brozell, Alec; Schadt, Eric E.; Drake, Thomas A.; Lusis, Aidons J.; Horvath, Steve.

In: PLoS Genetics, Vol. 2, No. 8, 04.09.2006, p. 1182-1192.

Research output: Contribution to journalArticle

Ghazalpour, A, Doss, S, Zhang, B, Wang, S, Plaisier, C, Castellanos, R, Brozell, A, Schadt, EE, Drake, TA, Lusis, AJ & Horvath, S 2006, 'Integrating genetic and network analysis to characterize genes related to mouse weight', PLoS Genetics, vol. 2, no. 8, pp. 1182-1192. https://doi.org/10.1371/journal.pgen.0020130
Ghazalpour, Anatole ; Doss, Sudheer ; Zhang, Bin ; Wang, Susanna ; Plaisier, Christopher ; Castellanos, Ruth ; Brozell, Alec ; Schadt, Eric E. ; Drake, Thomas A. ; Lusis, Aidons J. ; Horvath, Steve. / Integrating genetic and network analysis to characterize genes related to mouse weight. In: PLoS Genetics. 2006 ; Vol. 2, No. 8. pp. 1182-1192.
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