Incorporation of Phosphorylated Tyrosine into Proteins: In Vitro Translation and Study of Phosphorylated IκB-α and Its Interaction with NF-κB

Shengxi Chen, Rumit Maini, Xiaoguang Bai, Ryan C. Nangreave, Larisa Dedkova, Sidney Hecht

Research output: Contribution to journalArticle

5 Citations (Scopus)

Abstract

Phosphorylated proteins play important roles in the regulation of many different cell networks. However, unlike the preparation of proteins containing unmodified proteinogenic amino acids, which can be altered readily by site-directed mutagenesis and expressed in vitro and in vivo, the preparation of proteins phosphorylated at predetermined sites cannot be done easily and in acceptable yields. To enable the synthesis of phosphorylated proteins for in vitro studies, we have explored the use of phosphorylated amino acids in which the phosphate moiety bears a chemical protecting group, thus eliminating the negative charges that have been shown to have a negative effect on protein translation. Bis-o-nitrobenzyl protection of tyrosine phosphate enabled its incorporation into DHFR and IκB-α using wild-type ribosomes, and the elaborated proteins could subsequently be deprotected by photolysis. Also investigated in parallel was the re-engineering of the 23S rRNA of Escherichia coli, guided by the use of a phosphorylated puromycin, to identify modified ribosomes capable of incorporating unprotected phosphotyrosine into proteins from a phosphotyrosyl-tRNACUA by UAG codon suppression during in vitro translation. Selection of a library of modified ribosomal clones with phosphorylated puromycin identified six modified ribosome variants having mutations in nucleotides 2600-2605 of 23S rRNA; these had enhanced sensitivity to the phosphorylated puromycin. The six clones demonstrated some sequence homology in the region 2600-2605 and incorporated unprotected phosphotyrosine into IκB-α using a modified gene having a TAG codon in the position corresponding to amino acid 42 of the protein. The purified phosphorylated protein bound to a phosphotyrosine specific antibody and permitted NF-κB binding to a DNA duplex sequence corresponding to its binding site in the IL-2 gene promoter. Unexpectedly, phosphorylated IκB-α also mediated the exchange of exogenous DNA into an NF-κB-cellular DNA complex isolated from the nucleus of activated Jurkat cells.

Original languageEnglish (US)
Pages (from-to)14098-14108
Number of pages11
JournalJournal of the American Chemical Society
Volume139
Issue number40
DOIs
StatePublished - Oct 11 2017

Fingerprint

Tyrosine
Proteins
Puromycin
Phosphotyrosine
Ribosomes
Amino acids
Terminator Codon
Amino Acids
Clone Cells
Phosphates
DNA
Genes
Jurkat Cells
In Vitro Techniques
Photolysis
Mutagenesis
Protein Biosynthesis
Sequence Homology
Site-Directed Mutagenesis
DNA sequences

ASJC Scopus subject areas

  • Catalysis
  • Chemistry(all)
  • Biochemistry
  • Colloid and Surface Chemistry

Cite this

Incorporation of Phosphorylated Tyrosine into Proteins : In Vitro Translation and Study of Phosphorylated IκB-α and Its Interaction with NF-κB. / Chen, Shengxi; Maini, Rumit; Bai, Xiaoguang; Nangreave, Ryan C.; Dedkova, Larisa; Hecht, Sidney.

In: Journal of the American Chemical Society, Vol. 139, No. 40, 11.10.2017, p. 14098-14108.

Research output: Contribution to journalArticle

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