Improving Escherichia coli fucO for furfural tolerance by saturation mutagenesis of individual amino acid positions

Huabao Zheng, Xuan Wang, Lorraine P. Yomano, Ryan D. Geddes, Keelnatham T. Shanmugam, Lonnie O. Ingram

Research output: Contribution to journalArticle

23 Citations (Scopus)

Abstract

Furfural is an inhibitory side product formed during the depolymerization of hemicellulose with mineral acids. In Escherichia coli, furfural tolerance can be increased by expressing the native fucO gene (encoding lactaldehyde oxidoreductase). This enzyme also catalyzes the NADH-dependent reduction of furfural to the less toxic alcohol. Saturation mutagenesis was combined with growth-based selection to isolate a mutated form of fucO that confers increased furfural tolerance. The mutation responsible, L7F, is located within the interfacial region of FucO homodimers, replacing the most abundant codon for leucine with the most abundant codon for phenylalanine. Plasmid expression of the mutant gene increased FucO activity by more than 10-fold compared to the wild-type fucO gene and doubled the rate of furfural metabolism during fermentation. No inclusion bodies were evident with either the native or the mutated gene. mRNA abundance for the wild-type and mutant fucO genes differed by less than 2-fold. The Km (furfural) for the mutant enzyme was 3-fold lower than that for the native enzyme, increasing efficiency at low substrate concentrations. The L7F mutation is located near the FucO N terminus, within the ribosomal binding region associated with translational initiation. Free-energy calculations for mRNA folding in this region (nucleotides -7 to +37) were weak for the native gene (-4.1 kcal mol-1) but weaker still for the fucO mutant (-1.0 to-0.1 kcal mol-1). The beneficial L7F mutation in FucO is proposed to increase furfural tolerance by improving gene expression and increasing enzyme effectiveness at low substrate levels.

Original languageEnglish (US)
Pages (from-to)3202-3208
Number of pages7
JournalApplied and Environmental Microbiology
Volume79
Issue number10
DOIs
StatePublished - May 2013
Externally publishedYes

Fingerprint

Furaldehyde
furfural
mutagenesis
Mutagenesis
amino acid
tolerance
saturation
Escherichia coli
Amino Acids
amino acids
gene
enzyme
mutation
mutants
fold
genes
Genes
Enzymes
enzymes
codons

ASJC Scopus subject areas

  • Applied Microbiology and Biotechnology
  • Food Science
  • Biotechnology
  • Ecology

Cite this

Improving Escherichia coli fucO for furfural tolerance by saturation mutagenesis of individual amino acid positions. / Zheng, Huabao; Wang, Xuan; Yomano, Lorraine P.; Geddes, Ryan D.; Shanmugam, Keelnatham T.; Ingram, Lonnie O.

In: Applied and Environmental Microbiology, Vol. 79, No. 10, 05.2013, p. 3202-3208.

Research output: Contribution to journalArticle

Zheng, Huabao ; Wang, Xuan ; Yomano, Lorraine P. ; Geddes, Ryan D. ; Shanmugam, Keelnatham T. ; Ingram, Lonnie O. / Improving Escherichia coli fucO for furfural tolerance by saturation mutagenesis of individual amino acid positions. In: Applied and Environmental Microbiology. 2013 ; Vol. 79, No. 10. pp. 3202-3208.
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