Improving Biomedical Information Retrieval with Neural Retrievers

Man Luo, Arindam Mitra, Tejas Gokhale, Chitta Baral

Research output: Chapter in Book/Report/Conference proceedingConference contribution


Information retrieval (IR) is essential in search engines and dialogue systems as well as natural language processing tasks such as open-domain question answering. IR serve an important function in the biomedical domain, where content and sources of scientific knowledge may evolve rapidly. Although neural retrievers have surpassed traditional IR approaches such as TF-IDF and BM25 in standard open-domain question answering tasks, they are still found lacking in the biomedical domain. In this paper, we seek to improve information retrieval (IR) using neural retrievers (NR) in the biomedical domain, and achieve this goal using a three-pronged approach. First, to tackle the relative lack of data in the biomedical domain, we propose a template-based question generation method that can be leveraged to train neural retriever models. Second, we develop two novel pre-training tasks that are closely aligned to the downstream task of information retrieval. Third, we introduce the "Poly-DPR"model which encodes each context into multiple context vectors. Extensive experiments and analysis on the BioASQ challenge suggest that our proposed method leads to large gains over existing neural approaches and beats BM25 in the small-corpus setting. We show that BM25 and our method can complement each other, and a simple hybrid model leads to further gains in the large corpus setting.

Original languageEnglish (US)
Title of host publicationAAAI-22 Technical Tracks 10
PublisherAssociation for the Advancement of Artificial Intelligence
Number of pages9
ISBN (Electronic)1577358767, 9781577358763
StatePublished - Jun 30 2022
Event36th AAAI Conference on Artificial Intelligence, AAAI 2022 - Virtual, Online
Duration: Feb 22 2022Mar 1 2022

Publication series

NameProceedings of the 36th AAAI Conference on Artificial Intelligence, AAAI 2022


Conference36th AAAI Conference on Artificial Intelligence, AAAI 2022
CityVirtual, Online

ASJC Scopus subject areas

  • Artificial Intelligence


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