Implementing bioinformatic workflows within the BioExtract Server

Carol M. Lushbough, Michael K. Bergman, Carolyn J. Lawrence, Doug Jennewein, Volker Brendel

Research output: Contribution to journalArticlepeer-review

1 Scopus citations

Abstract

Computational workflows in bioinformatics are becoming increasingly important in the achievement of scientific advances. These workflows typically require the integrated use of multiple, distributed data sources and analytic tools. The BioExtract Server (http://bioextract.org) is a distributed service designed to provide researchers with the web ability to query multiple data sources, save results as searchable data sets, and execute analytic tools. As the researcher works with the system, their tasks are saved in the background. At any time these steps can be saved as a workflow that can then be executed again and/or modified later.

Original languageEnglish (US)
Pages (from-to)302-312
Number of pages11
JournalInternational Journal of Computational Biology and Drug Design
Volume1
Issue number3
DOIs
StatePublished - 2008
Externally publishedYes

Keywords

  • bioinformatics (genome or protein) databases
  • database integration
  • distributed architectures
  • heterogeneous databases

ASJC Scopus subject areas

  • Drug Discovery
  • Computer Science Applications

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