TY - JOUR
T1 - Homozygous diploid deletion strains of Saccharomyces cerevisiae that determine lag phase and dehydration tolerance
AU - D'Elia, Riccardo
AU - Allen, Patricia L.
AU - Johanson, Kelly
AU - Nickerson, Cheryl A.
AU - Hammond, Timothy G.
N1 - Funding Information:
Acknowledgements This work was supported by NASA NRA grant NAG 9-1344 (T.G.H.), NASA co-operative agreements NCC 2-1177 (T.G.H.) and NCC 2-1362 (C.A.N.), and NIEHS ARCH ES09996 (T.G.H.). It was supported in part by NIH grant number P20 RR017659 from the Institutional Development Award Program of the National Center for Research Resources, and by the Louisiana Board of Regents through the Millennium Trust Health Excellence Fund contract number HEF(2001-06)-07. We thank the New Orleans VA for providing space, equipment, and salaries (T.G.H.) in support of these studies, and Dr. Kent Buchanan for advice on yeast. We thank the gene array core at the Tulane Gene Therapy Center and the Molecular Biology Core, Medical College of Georgia, for performing the Affymetrix arrays
PY - 2005/6
Y1 - 2005/6
N2 - This study identifies genes that determine length of lag phase, using the model eukaryotic organism, Saccharomyces cerevisiae. We report growth of a yeast deletion series following variations in the lag phase induced by variable storage times after drying-down yeast on filters. Using a homozygous diploid deletion pool, lag times ranging from 0 h to 90 h were associated with increased drop-out of mitochondrial genes and increased survival of nuclear genes. Simple linear regression (R 2 analysis) shows that there are over 500 genes for which >70% of the variation can be explained by lag alone. In the genes with a positive correlation, such that the gene abundance increases with lag and hence the deletion strain is suitable for survival during prolonged storage, there is a strong predominance of nucleonic genes. In the genes with a negative correlation, such that the gene abundance decreases with lag and hence the strain may be critical for getting yeast out of the lag phase, there is a strong predominance of glycoproteins and transmembrane proteins. This study identifies yeast deletion strains with survival advantage on prolonged storage and amplifies our understanding of the genes critical for getting out of the lag phase.
AB - This study identifies genes that determine length of lag phase, using the model eukaryotic organism, Saccharomyces cerevisiae. We report growth of a yeast deletion series following variations in the lag phase induced by variable storage times after drying-down yeast on filters. Using a homozygous diploid deletion pool, lag times ranging from 0 h to 90 h were associated with increased drop-out of mitochondrial genes and increased survival of nuclear genes. Simple linear regression (R 2 analysis) shows that there are over 500 genes for which >70% of the variation can be explained by lag alone. In the genes with a positive correlation, such that the gene abundance increases with lag and hence the deletion strain is suitable for survival during prolonged storage, there is a strong predominance of nucleonic genes. In the genes with a negative correlation, such that the gene abundance decreases with lag and hence the strain may be critical for getting yeast out of the lag phase, there is a strong predominance of glycoproteins and transmembrane proteins. This study identifies yeast deletion strains with survival advantage on prolonged storage and amplifies our understanding of the genes critical for getting out of the lag phase.
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U2 - 10.1007/s00253-004-1793-1
DO - 10.1007/s00253-004-1793-1
M3 - Article
C2 - 15968571
AN - SCOPUS:21344447091
SN - 0175-7598
VL - 67
SP - 816
EP - 826
JO - Applied Microbiology and Biotechnology
JF - Applied Microbiology and Biotechnology
IS - 6
ER -