Abstract
An essential problem for biologists is the processing and evaluation of BLAST results. We advocate the deployment of database technology and describe a user-driven tool, called BlastQuest. BlastQuest provides interactive, Web-enabled query, analysis, and visualization facilities beyond what is possible by current BLAST interfaces. Specifically, the BLAST results are extracted, structured, and stored persistently in a relational database to support a series of build-in analysis operations that can be used to select, filter, and order data from multiple BLAST results efficiently and without referring to the original results. Users have the option to interact with the BlastQuest through a forms-based interface.
| Original language | English (US) |
|---|---|
| Title of host publication | Proceedings - International Workshop on Database and Expert Systems Applications, DEXA |
| Publisher | Institute of Electrical and Electronics Engineers Inc. |
| Pages | 37-41 |
| Number of pages | 5 |
| Volume | 2003-January |
| ISBN (Print) | 0769519938 |
| DOIs | |
| State | Published - 2003 |
| Externally published | Yes |
| Event | 14th International Workshop on Database and Expert Systems Applications, DEXA 2003 - Prague, Czech Republic Duration: Sep 1 2003 → Sep 5 2003 |
Other
| Other | 14th International Workshop on Database and Expert Systems Applications, DEXA 2003 |
|---|---|
| Country | Czech Republic |
| City | Prague |
| Period | 9/1/03 → 9/5/03 |
Fingerprint
Keywords
- Biology computing
- Biotechnology
- Data analysis
- Data visualization
- DNA
- Filters
- Information science
- Project management
- Relational databases
- Sequences
ASJC Scopus subject areas
- Engineering(all)
Cite this
Having a BLAST : Analyzing gene sequence data with BlastQuest. / Farmerie, W. G.; Hammer, J.; Liu, Li; Schneider, M.
Proceedings - International Workshop on Database and Expert Systems Applications, DEXA. Vol. 2003-January Institute of Electrical and Electronics Engineers Inc., 2003. p. 37-41 1231995.Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
}
TY - GEN
T1 - Having a BLAST
T2 - Analyzing gene sequence data with BlastQuest
AU - Farmerie, W. G.
AU - Hammer, J.
AU - Liu, Li
AU - Schneider, M.
PY - 2003
Y1 - 2003
N2 - An essential problem for biologists is the processing and evaluation of BLAST results. We advocate the deployment of database technology and describe a user-driven tool, called BlastQuest. BlastQuest provides interactive, Web-enabled query, analysis, and visualization facilities beyond what is possible by current BLAST interfaces. Specifically, the BLAST results are extracted, structured, and stored persistently in a relational database to support a series of build-in analysis operations that can be used to select, filter, and order data from multiple BLAST results efficiently and without referring to the original results. Users have the option to interact with the BlastQuest through a forms-based interface.
AB - An essential problem for biologists is the processing and evaluation of BLAST results. We advocate the deployment of database technology and describe a user-driven tool, called BlastQuest. BlastQuest provides interactive, Web-enabled query, analysis, and visualization facilities beyond what is possible by current BLAST interfaces. Specifically, the BLAST results are extracted, structured, and stored persistently in a relational database to support a series of build-in analysis operations that can be used to select, filter, and order data from multiple BLAST results efficiently and without referring to the original results. Users have the option to interact with the BlastQuest through a forms-based interface.
KW - Biology computing
KW - Biotechnology
KW - Data analysis
KW - Data visualization
KW - DNA
KW - Filters
KW - Information science
KW - Project management
KW - Relational databases
KW - Sequences
UR - http://www.scopus.com/inward/record.url?scp=84942809880&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=84942809880&partnerID=8YFLogxK
U2 - 10.1109/DEXA.2003.1231995
DO - 10.1109/DEXA.2003.1231995
M3 - Conference contribution
AN - SCOPUS:84942809880
SN - 0769519938
VL - 2003-January
SP - 37
EP - 41
BT - Proceedings - International Workshop on Database and Expert Systems Applications, DEXA
PB - Institute of Electrical and Electronics Engineers Inc.
ER -