Extracting protein-protein interactions from MEDLINE using syntactic roles

Syed Toufeeq Ahmed; Hasan Davulcu; Chitta Baral

doi:10.1109/BIBM.2008.62

Extracting protein-protein interactions from MEDLINE using syntactic roles

Syed Toufeeq Ahmed, Hasan Davulcu, Chitta Baral

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

1 Scopus citations

Abstract

With rapid growth in genomics research in last decade, amount of information a biomedical researcher has to keep track of and understand has increased tremendously. We present a fully automated information extraction system to aid these researchers to identify and locate gene and protein interactions in biomedical text. Our extraction system handles complex sentences and extracts multiple and nested interactions specified in these sentences. Experimental evaluations with two other state of the art extraction systems indicate that the IntEx system achieves better performance without the labor intensive pattern engineering requirement.

Original language	English (US)
Title of host publication	Proceedings - IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008
Pages	473-476
Number of pages	4
DOIs	https://doi.org/10.1109/BIBM.2008.62
State	Published - 2008
Event	2008 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008 - Philadelphia, PA, United States Duration: Nov 3 2008 → Nov 5 2008

Publication series

Name	Proceedings - IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008

Other

Other	2008 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008
Country/Territory	United States
City	Philadelphia, PA
Period	11/3/08 → 11/5/08

ASJC Scopus subject areas

Molecular Biology
Information Systems
Biomedical Engineering

Access to Document

10.1109/BIBM.2008.62

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Ahmed, S. T., Davulcu, H., & Baral, C. (2008). Extracting protein-protein interactions from MEDLINE using syntactic roles. In Proceedings - IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008 (pp. 473-476). Article 4684942 (Proceedings - IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008). https://doi.org/10.1109/BIBM.2008.62

Extracting protein-protein interactions from MEDLINE using syntactic roles. / Ahmed, Syed Toufeeq; Davulcu, Hasan ; Baral, Chitta.
Proceedings - IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008. 2008. p. 473-476 4684942 (Proceedings - IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Ahmed, ST, Davulcu, H & Baral, C 2008, Extracting protein-protein interactions from MEDLINE using syntactic roles. in Proceedings - IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008., 4684942, Proceedings - IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008, pp. 473-476, 2008 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008, Philadelphia, PA, United States, 11/3/08. https://doi.org/10.1109/BIBM.2008.62

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Extracting protein-protein interactions from MEDLINE using syntactic roles

Abstract

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Other

ASJC Scopus subject areas

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