Exploring spatial patterns of gene expression from Fruit Fly embryogenesis on the iPhone

Sudhir Kumar, Kelly Boccia, Michael McCutchan, Jieping Ye

Research output: Contribution to journalArticle

4 Scopus citations

Abstract

Mobile technologies provide unique opportunities for ubiquitous distribution of scientific information through user-friendly interfaces. Therefore, we have developed a new FlyExpress mobile application that makes available a growing collection (>100 000) of standardized in situ hybridization images containing spatial patterns of gene expression from Drosophila melanogaster (fruit fly) embryogenesis. Using this application, scientists can visualize and compare expression patterns of >4000 developmentally relevant genes. The FlyExpress app displays the expression patterns of the selected gene for different visual projections (e.g. lateral) and displays them according to their developmental stages, which shows a gene's progression of spatial expression over developmental time. Ultimately, we envision the use of FlyExpress app in the laboratory where scientists may wish to immediately conduct a visual comparison of a known expression pattern with the one observed on the bench top or to display expression patterns of interest during scientific discussions at large.

Original languageEnglish (US)
Pages (from-to)2847-2848
Number of pages2
JournalBioinformatics
Volume28
Issue number21
DOIs
StatePublished - Nov 2012

ASJC Scopus subject areas

  • Statistics and Probability
  • Biochemistry
  • Molecular Biology
  • Computer Science Applications
  • Computational Theory and Mathematics
  • Computational Mathematics

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