Creating, documenting and sharing network models

Sharon Crook, James A. Bednar, Sandra Berger, Robert Cannon, Andrew P. Davison, Mikael Djurfeldt, Jochen Eppler, Birgit Kriener, Steve Furber, Bruce Graham, Hans E. Plesser, Lars Schwabe, Leslie Smith, Volker Steuber, Sacha Van Albada

Research output: Contribution to journalArticle

11 Citations (Scopus)

Abstract

As computational neuroscience matures, many simulation environments are available that are useful for neuronal network modeling. However, methods for successfully documenting models for publication and for exchanging models and model components among these projects are still under development. Here we briefly review existing software and applications for network model creation, documentation and exchange. Then we discuss a few of the larger issues facing the field of computational neuroscience regarding network modeling and suggest solutions to some of these problems, concentrating in particular on standardized network model terminology, notation, and descriptions and explicit documentation of model scaling. We hope this will enable and encourage computational neuroscientists to share their models more systematically in the future.

Original languageEnglish (US)
Pages (from-to)131-149
Number of pages19
JournalNetwork: Computation in Neural Systems
Volume23
Issue number4
DOIs
StatePublished - 2012

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Neurosciences
Documentation
Terminology
Publications
Software

Keywords

  • Model sharing
  • Network models
  • Spiking neurons

ASJC Scopus subject areas

  • Neuroscience (miscellaneous)

Cite this

Crook, S., Bednar, J. A., Berger, S., Cannon, R., Davison, A. P., Djurfeldt, M., ... Van Albada, S. (2012). Creating, documenting and sharing network models. Network: Computation in Neural Systems, 23(4), 131-149. https://doi.org/10.3109/0954898X.2012.722743

Creating, documenting and sharing network models. / Crook, Sharon; Bednar, James A.; Berger, Sandra; Cannon, Robert; Davison, Andrew P.; Djurfeldt, Mikael; Eppler, Jochen; Kriener, Birgit; Furber, Steve; Graham, Bruce; Plesser, Hans E.; Schwabe, Lars; Smith, Leslie; Steuber, Volker; Van Albada, Sacha.

In: Network: Computation in Neural Systems, Vol. 23, No. 4, 2012, p. 131-149.

Research output: Contribution to journalArticle

Crook, S, Bednar, JA, Berger, S, Cannon, R, Davison, AP, Djurfeldt, M, Eppler, J, Kriener, B, Furber, S, Graham, B, Plesser, HE, Schwabe, L, Smith, L, Steuber, V & Van Albada, S 2012, 'Creating, documenting and sharing network models', Network: Computation in Neural Systems, vol. 23, no. 4, pp. 131-149. https://doi.org/10.3109/0954898X.2012.722743
Crook, Sharon ; Bednar, James A. ; Berger, Sandra ; Cannon, Robert ; Davison, Andrew P. ; Djurfeldt, Mikael ; Eppler, Jochen ; Kriener, Birgit ; Furber, Steve ; Graham, Bruce ; Plesser, Hans E. ; Schwabe, Lars ; Smith, Leslie ; Steuber, Volker ; Van Albada, Sacha. / Creating, documenting and sharing network models. In: Network: Computation in Neural Systems. 2012 ; Vol. 23, No. 4. pp. 131-149.
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