Continuous flow real-time PCR device using multi-channel fluorescence excitation and detection

Andrew C. Hatch, Tathagata Ray, Kelly Lintecum, Cody Youngbull

Research output: Contribution to journalArticle

26 Scopus citations

Abstract

High throughput automation is greatly enhanced using techniques that employ conveyor belt strategies with un-interrupted streams of flow. We have developed a 'conveyor belt' analog for high throughput real-time quantitative Polymerase Chain Reaction (qPCR) using droplet emulsion technology. We developed a low power, portable device that employs LED and fiber optic fluorescence excitation in conjunction with a continuous flow thermal cycler to achieve multi-channel fluorescence detection for real-time fluorescence measurements. Continuously streaming fluid plugs or droplets pass through tubing wrapped around a twoerature zone thermal block with each wrap of tubing fluorescently coupled to a 64-channel multi-anode PMT. This work demonstrates real-time qPCR of 0.1-10 μL droplets or fluid plugs over a range of 7 orders of magnitude concentration from 1 × 101 to 1 × 107. The real-time qPCR analysis allows dynamic range quantification as high as 1 × 107 copies per 10 μL reaction, with PCR efficiencies within the range of 90-110% based on serial dilution assays and a limit of detection of 10 copies per rxn. The combined functionality of continuous flow, low power thermal cycling, high throughput sample processing, and real-time qPCR improves the rates at which biological or environmental samples can be continuously sampled and analyzed.

Original languageEnglish (US)
Pages (from-to)562-568
Number of pages7
JournalLab on a Chip
Volume14
Issue number3
DOIs
StatePublished - Feb 7 2014

ASJC Scopus subject areas

  • Bioengineering
  • Biochemistry
  • Chemistry(all)
  • Biomedical Engineering

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