Canine picornaviruses detected in wastewater in Arizona, USA 2019 and 2021

Temitope O.C. Faleye; Peter T. Skidmore; Amir Elyaderani; Abriana Smith; Nicole Kaiser; Sangeet Adhikari; Allan Yanez; Tyler Perleberg; Erin M. Driver; Rolf U. Halden; Arvind Varsani; Matthew Scotch

doi:10.1016/j.meegid.2022.105315

Canine picornaviruses detected in wastewater in Arizona, USA 2019 and 2021

Temitope O.C. Faleye, Peter T. Skidmore, Amir Elyaderani, Abriana Smith, Nicole Kaiser, Sangeet Adhikari, Allan Yanez, Tyler Perleberg, Erin M. Driver, Rolf U. Halden, Arvind Varsani, Matthew Scotch

Research output: Contribution to journal › Article › peer-review

3 Scopus citations

Abstract

Virus surveillance by wastewater-based epidemiology (WBE) in two Arizona municipalities in Maricopa County, USA (~700,000 people), revealed the presence of six canine picornavirus (CanPV) variants: five in 2019 and one in 2021. Phylogenetic analysis suggests these viruses might be from domestic dog breeds living within or around the area. Phylogenetic and pairwise identity analyses suggest over 15 years of likely enzootic circulation of multiple lineages of CanPV in the USA and possibly globally. Considering <10 CanPV sequences are publicly available in GenBank as of June 2, 2022, the results provided here constitute an increase of current knowledge on CanPV diversity and highlight the need for increased surveillance.

Original language	English (US)
Article number	105315
Journal	Infection, Genetics and Evolution
Volume	103
DOIs	https://doi.org/10.1016/j.meegid.2022.105315
State	Published - Sep 2022

Keywords

Arizona
Canine picornavirus
USA
Virus surveillance
Wastewater-based epidemiology

ASJC Scopus subject areas

Microbiology
Ecology, Evolution, Behavior and Systematics
Molecular Biology
Genetics
Microbiology (medical)
Infectious Diseases

Access to Document

10.1016/j.meegid.2022.105315

Cite this

@article{14843fd55d31472e95688ec0acc8ed21,

title = "Canine picornaviruses detected in wastewater in Arizona, USA 2019 and 2021",

abstract = "Virus surveillance by wastewater-based epidemiology (WBE) in two Arizona municipalities in Maricopa County, USA (~700,000 people), revealed the presence of six canine picornavirus (CanPV) variants: five in 2019 and one in 2021. Phylogenetic analysis suggests these viruses might be from domestic dog breeds living within or around the area. Phylogenetic and pairwise identity analyses suggest over 15 years of likely enzootic circulation of multiple lineages of CanPV in the USA and possibly globally. Considering <10 CanPV sequences are publicly available in GenBank as of June 2, 2022, the results provided here constitute an increase of current knowledge on CanPV diversity and highlight the need for increased surveillance.",

keywords = "Arizona, Canine picornavirus, USA, Virus surveillance, Wastewater-based epidemiology",

author = "Faleye, {Temitope O.C.} and Skidmore, {Peter T.} and Amir Elyaderani and Abriana Smith and Nicole Kaiser and Sangeet Adhikari and Allan Yanez and Tyler Perleberg and Driver, {Erin M.} and Halden, {Rolf U.} and Arvind Varsani and Matthew Scotch",

note = "Publisher Copyright: {\textcopyright} 2022 The Authors",

year = "2022",

month = sep,

doi = "10.1016/j.meegid.2022.105315",

language = "English (US)",

volume = "103",

journal = "Infection, Genetics and Evolution",

issn = "1567-1348",

publisher = "Elsevier",

}

TY - JOUR

T1 - Canine picornaviruses detected in wastewater in Arizona, USA 2019 and 2021

AU - Faleye, Temitope O.C.

AU - Skidmore, Peter T.

AU - Elyaderani, Amir

AU - Smith, Abriana

AU - Kaiser, Nicole

AU - Adhikari, Sangeet

AU - Yanez, Allan

AU - Perleberg, Tyler

AU - Driver, Erin M.

AU - Halden, Rolf U.

AU - Varsani, Arvind

AU - Scotch, Matthew

PY - 2022/9

Y1 - 2022/9

N2 - Virus surveillance by wastewater-based epidemiology (WBE) in two Arizona municipalities in Maricopa County, USA (~700,000 people), revealed the presence of six canine picornavirus (CanPV) variants: five in 2019 and one in 2021. Phylogenetic analysis suggests these viruses might be from domestic dog breeds living within or around the area. Phylogenetic and pairwise identity analyses suggest over 15 years of likely enzootic circulation of multiple lineages of CanPV in the USA and possibly globally. Considering <10 CanPV sequences are publicly available in GenBank as of June 2, 2022, the results provided here constitute an increase of current knowledge on CanPV diversity and highlight the need for increased surveillance.

AB - Virus surveillance by wastewater-based epidemiology (WBE) in two Arizona municipalities in Maricopa County, USA (~700,000 people), revealed the presence of six canine picornavirus (CanPV) variants: five in 2019 and one in 2021. Phylogenetic analysis suggests these viruses might be from domestic dog breeds living within or around the area. Phylogenetic and pairwise identity analyses suggest over 15 years of likely enzootic circulation of multiple lineages of CanPV in the USA and possibly globally. Considering <10 CanPV sequences are publicly available in GenBank as of June 2, 2022, the results provided here constitute an increase of current knowledge on CanPV diversity and highlight the need for increased surveillance.

KW - Arizona

KW - Canine picornavirus

KW - USA

KW - Virus surveillance

KW - Wastewater-based epidemiology

UR - http://www.scopus.com/inward/record.url?scp=85132833251&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=85132833251&partnerID=8YFLogxK

U2 - 10.1016/j.meegid.2022.105315

DO - 10.1016/j.meegid.2022.105315

M3 - Article

C2 - 35714764

AN - SCOPUS:85132833251

SN - 1567-1348

VL - 103

JO - Infection, Genetics and Evolution

JF - Infection, Genetics and Evolution

M1 - 105315

ER -

Canine picornaviruses detected in wastewater in Arizona, USA 2019 and 2021

Abstract

Keywords

ASJC Scopus subject areas

Access to Document

Other files and links

Fingerprint

Cite this