Abstract
Summary: Bambino is a variant detector and graphical alignment viewer for next-generation sequencing data in the SAM/BAM format, which is capable of pooling data from multiple source files. The variant detector takes advantage of SAM-specific annotations, and produces detailed output suitable for genotyping and identification of somatic mutations. The assembly viewer can display reads in the context of either a user-provided or automatically generated reference sequence, retrieve genome annotation features from a UCSC genome annotation database, display histograms of nonreference allele frequencies, and predict protein-coding changes caused by SNPs. Published by Oxford University Press on behalf of the US Government 2011.
Original language | English (US) |
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Article number | btr032 |
Pages (from-to) | 865-866 |
Number of pages | 2 |
Journal | Bioinformatics |
Volume | 27 |
Issue number | 6 |
DOIs | |
State | Published - Mar 2011 |
Externally published | Yes |
ASJC Scopus subject areas
- Statistics and Probability
- Biochemistry
- Molecular Biology
- Computer Science Applications
- Computational Theory and Mathematics
- Computational Mathematics