TY - JOUR
T1 - A sequential tree-based classifier for personalized biomarker testing of Alzheimer's disease risk
AU - Si, Bing
AU - Yakushev, Igor
AU - Li, Jing
N1 - Funding Information:
This work was partially funded by NSF CMMI grant #1149602. In addition, data collection and sharing for this project were funded by the Alzheimer’s Disease Neuroimaging Initiative (ADNI) (National Institutes of Health Grant U01 AG024904) and DOD ADNI (Department of Defense award number W81XWH-12-2-0012). ADNI is funded by the National Institute on Aging, the National Institute of Biomedical Imaging and Bioengineering, and through generous contributions from the following: AbbVie; Alzheimer’s Association; Alzheimer’s Drug Discovery Foundation; Araclon Biotech; BioClinica, Inc.; Biogen; Bristol-Myers Squibb Company; CereSpir, Inc.; Cogstate; Eisai Inc.; Elan Pharmaceuticals, Inc.; Eli Lilly and Company; EuroImmun; F. Hoffmann-La Roche Ltd. and its affiliated company Genentech, Inc.; Fujirebio; GE Healthcare; IXICO Ltd.; Janssen Alzheimer Immunotherapy Research & Development, LLC; Johnson & Johnson Pharmaceutical Research & Development LLC; Lumosity; Lund-beck; Merck & Co., Inc.; Meso Scale Diagnostics, LLC; NeuroRx Research; Neurotrack Technologies; Novartis Pharmaceuticals Corporation; Pfizer Inc.; Piramal Imaging; Servier; Takeda Pharmaceutical Company; and Transition Therapeutics. The Canadian Institutes of Health Research is providing funds to support ADNI clinical sites in Canada. Private sector contributions are facilitated by the Foundation for the National Institutes of Health (www.fnih.org). The grantee organization is the Northern California Institute for Research and Education, and the study is coordinated by the Alzheimer’s Therapeutic Research Institute at the University of Southern California. ADNI data are disseminated by the Laboratory for Neuro Imaging at the University of Southern California.
Publisher Copyright:
© 2017 “IISE”.
PY - 2017/10/2
Y1 - 2017/10/2
N2 - Using baseline biomarkers to predict the conversion of mild cognitive impairment (MCI) to Alzheimer's disease (AD) has considerable clinical interest in recent years. The existing studies have several limitations, including unsatisfactory accuracy due to MCI heterogeneity, use of conventional classification models that require biomarkers to be measured all at once instead of sequentially and as needed, and use of raw numerical measurement of the biomarkers instead of discretized levels that are more robust to measurement errors and provide convenience for clinical utilization. To tackle these limitations, we propose a novel sequence tree-based classifier (STC) for predicting the conversion of MCI to AD. Different from conventional classification models, STC achieves a sequential, as-needed use of biomarkers and a three-category classification (high-risk converter, low-risk converter, and inconclusive diagnosis) by finding an optimal sequence of biomarkers and two-sided cutoffs of each biomarker that satisfy pre-specified accuracy requirements while minimizing the proportion of inconclusive diagnosis. STC is also a personalized approach, as it allows patient characteristic variables to be included to help identify patient-specific cutoffs for each biomarker. We apply STC to two important clinical applications using the data from the worldwide Alzheimer's Disease Neuroimaging Initiative project: prediction of MCI conversion and patient selection for AD-related clinical trials.
AB - Using baseline biomarkers to predict the conversion of mild cognitive impairment (MCI) to Alzheimer's disease (AD) has considerable clinical interest in recent years. The existing studies have several limitations, including unsatisfactory accuracy due to MCI heterogeneity, use of conventional classification models that require biomarkers to be measured all at once instead of sequentially and as needed, and use of raw numerical measurement of the biomarkers instead of discretized levels that are more robust to measurement errors and provide convenience for clinical utilization. To tackle these limitations, we propose a novel sequence tree-based classifier (STC) for predicting the conversion of MCI to AD. Different from conventional classification models, STC achieves a sequential, as-needed use of biomarkers and a three-category classification (high-risk converter, low-risk converter, and inconclusive diagnosis) by finding an optimal sequence of biomarkers and two-sided cutoffs of each biomarker that satisfy pre-specified accuracy requirements while minimizing the proportion of inconclusive diagnosis. STC is also a personalized approach, as it allows patient characteristic variables to be included to help identify patient-specific cutoffs for each biomarker. We apply STC to two important clinical applications using the data from the worldwide Alzheimer's Disease Neuroimaging Initiative project: prediction of MCI conversion and patient selection for AD-related clinical trials.
KW - Alzheimer's disease
KW - Classification
KW - biomarker
KW - personalized medicine
KW - sequential decision making
UR - http://www.scopus.com/inward/record.url?scp=85030534837&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=85030534837&partnerID=8YFLogxK
U2 - 10.1080/24725579.2017.1367979
DO - 10.1080/24725579.2017.1367979
M3 - Article
AN - SCOPUS:85030534837
SN - 2472-5579
VL - 7
SP - 248
EP - 260
JO - IISE Transactions on Healthcare Systems Engineering
JF - IISE Transactions on Healthcare Systems Engineering
IS - 4
ER -