Abstract

Raman spectroscopy is used to probe the nature of the hydrogen bonds which hold the water of hydration to DNA. The ∼ 3450 cm-1 molecular O-H stretching mode shows that the first six water molecules per base pair of the primary hydration shell are very strongly bound to the DNA. The observed shift in the peak position of this mode permits a determination of the length of the hydrogen bonds for these water molecules. These hydrogen bonds appear to be about 0.3 Å shorter than the hydrogen bonds in bulk water. The linewidth of this mode shows no significant changes above water contents of about 15 water molecules per base pair. This technique of using a vibrational spectroscopy to obtain structural information about the hydration shells of DNA could be used to study the hydration shells of other biomolecules.

Original languageEnglish (US)
Pages (from-to)1337-1342
Number of pages6
JournalJournal of Biomolecular Structure and Dynamics
Volume31
Issue number11
DOIs
StatePublished - Nov 1 2013

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Raman Spectrum Analysis
Water
Hydrogen
DNA
Base Pairing
Spectrum Analysis

Keywords

  • DNA
  • hydrogen bonding
  • water of hydration

ASJC Scopus subject areas

  • Molecular Biology
  • Structural Biology

Cite this

A Raman scattering study of the interactions of DNA with its water of hydration. / Lee, Scott A.; Tao, Nongjian; Rupprecht, Allan.

In: Journal of Biomolecular Structure and Dynamics, Vol. 31, No. 11, 01.11.2013, p. 1337-1342.

Research output: Contribution to journalArticle

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AB - Raman spectroscopy is used to probe the nature of the hydrogen bonds which hold the water of hydration to DNA. The ∼ 3450 cm-1 molecular O-H stretching mode shows that the first six water molecules per base pair of the primary hydration shell are very strongly bound to the DNA. The observed shift in the peak position of this mode permits a determination of the length of the hydrogen bonds for these water molecules. These hydrogen bonds appear to be about 0.3 Å shorter than the hydrogen bonds in bulk water. The linewidth of this mode shows no significant changes above water contents of about 15 water molecules per base pair. This technique of using a vibrational spectroscopy to obtain structural information about the hydration shells of DNA could be used to study the hydration shells of other biomolecules.

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