TY - JOUR
T1 - A logic approach to modelling nomenclatural change
AU - Franz, Nico
AU - Zhang, Chao
AU - Lee, Joohyung
N1 - Funding Information:
We thank Stanley Blum, Neal Evenhuis, Thomas Pape, David Patterson, Richard Pyle and Francisco Welter-Schultes for their advice in conceiving the use case and in the application of nomenclatural rules. Bertram Ludascher, Parisa Kianmajd and Shizuo Yu provided support for the Euler/X toolkit. We also thank the Associate Editor and two anonymous reviewers for constructive comments that have led to improvements of this paper. Support of the authors’ research through the National Science Foundation is kindly acknowledged (N.M.F.: DEB-1155984, DBI-1342595; J.L.: IIS-1319794, IIS-1526301).
Publisher Copyright:
© 2017 The Authors Cladistics published by John Wiley & Sons Ltd on behalf of Willi Hennig Society
PY - 2018/6
Y1 - 2018/6
N2 - We utilize an Answer Set Programming (ASP) approach to show that the principles of nomenclature are tractable in computational logic. To this end we design a hypothetical, 20 nomenclatural taxon use case, with starting conditions that embody several overarching principles of the International Code of Zoological Nomenclature, including Binomial Nomenclature, Priority, Coordination, Homonymy, Typification and the structural requirement of Gender Agreement. The use case ending conditions are triggered by the reinterpretation of the diagnostic features of one of 12 type specimens anchoring the corresponding species-level epithets. Permutations of this child-to-parent reassignment action lead to 36 alternative scenarios, where each scenario requires a set of 1–14 logically contingent nomenclatural emendations. We show that an ASP transition system approach can correctly infer the Code-mandated changes for each scenario, and visually output the ending conditions. The results provide a foundation for further developing logic-based nomenclatural change optimization and validation services, which could be applied in global nomenclatural registries. More generally, logic explorations of nomenclatural and taxonomic change scenarios provide a novel means of assessing design biases inherent in the principles of nomenclature, and can therefore inform the design of future, big data-compatible identifier systems that recognize and mitigate these constraints.
AB - We utilize an Answer Set Programming (ASP) approach to show that the principles of nomenclature are tractable in computational logic. To this end we design a hypothetical, 20 nomenclatural taxon use case, with starting conditions that embody several overarching principles of the International Code of Zoological Nomenclature, including Binomial Nomenclature, Priority, Coordination, Homonymy, Typification and the structural requirement of Gender Agreement. The use case ending conditions are triggered by the reinterpretation of the diagnostic features of one of 12 type specimens anchoring the corresponding species-level epithets. Permutations of this child-to-parent reassignment action lead to 36 alternative scenarios, where each scenario requires a set of 1–14 logically contingent nomenclatural emendations. We show that an ASP transition system approach can correctly infer the Code-mandated changes for each scenario, and visually output the ending conditions. The results provide a foundation for further developing logic-based nomenclatural change optimization and validation services, which could be applied in global nomenclatural registries. More generally, logic explorations of nomenclatural and taxonomic change scenarios provide a novel means of assessing design biases inherent in the principles of nomenclature, and can therefore inform the design of future, big data-compatible identifier systems that recognize and mitigate these constraints.
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U2 - 10.1111/cla.12201
DO - 10.1111/cla.12201
M3 - Article
AN - SCOPUS:85018785208
SN - 0748-3007
VL - 34
SP - 336
EP - 357
JO - Cladistics
JF - Cladistics
IS - 3
ER -