A Gel Filtration-Based Method for the Purification of Infectious Rotavirus Particles for Environmental Research Applications

Kata Farkas, Liping Pang, Susan Lin, Wendy Williamson, Richard Easingwood, Rayleen Fredericks, Mohamed A. Jaffer, Arvind Varsani

Research output: Contribution to journalArticle

11 Citations (Scopus)

Abstract

This article describes a rapid method for purifying infectious rotavirus particles from cell culture for environmental research. The method is based on size-exclusion chromatography using TOSOH TSKgel® G5000PWXL-CP with a TSKgel® Size Exclusion G2500PWxl guard column, set up on an AKTA Explorer10. Four peaks were identified from the chromatogram and the corresponding fractions were collected and analysed by electron microscopy, 1-step quantitative reverse transcription polymerase chain reaction (RT-PCR) and qNano measurement. Infectivity potential of the recovered virus particles was determined using cell culture. Our analysis reveals that the first fraction contains majority of the intact triple-layered infectious virions while the other three fractions contain mixtures of empty capsids and intact infectious virions. Our results also indicate that there is a gross overestimation of rotaviruses in crude extracts due to encapsidated RNA in the order of 2.3 × 1011 particles and we note that estimates by qNano are similarly skewed (1.36 × 1013 particle) possibly due to empty capsids and cellular debris. In summary we present a method for purification (~12 h) of rotaviruses for a more robust and accurate quantification of virus size, surface charge and particle concentration in environmental contexts.

Original languageEnglish (US)
Pages (from-to)231-235
Number of pages5
JournalFood and Environmental Virology
Volume5
Issue number4
DOIs
StatePublished - Dec 2013
Externally publishedYes

Fingerprint

purification methods
Rotavirus
Virion
Gel Chromatography
Capsid
virion
gels
capsid
Cell Culture Techniques
Research
cell culture
Complex Mixtures
Reverse Transcription
Electron Microscopy
rapid methods
RNA
Viruses
Polymerase Chain Reaction
electron microscopy
quantitative polymerase chain reaction

Keywords

  • Characterisation
  • Purification
  • Quantification
  • Rotavirus
  • Size-exclusion chromatography

ASJC Scopus subject areas

  • Epidemiology
  • Health, Toxicology and Mutagenesis
  • Food Science
  • Virology

Cite this

A Gel Filtration-Based Method for the Purification of Infectious Rotavirus Particles for Environmental Research Applications. / Farkas, Kata; Pang, Liping; Lin, Susan; Williamson, Wendy; Easingwood, Richard; Fredericks, Rayleen; Jaffer, Mohamed A.; Varsani, Arvind.

In: Food and Environmental Virology, Vol. 5, No. 4, 12.2013, p. 231-235.

Research output: Contribution to journalArticle

Farkas, Kata ; Pang, Liping ; Lin, Susan ; Williamson, Wendy ; Easingwood, Richard ; Fredericks, Rayleen ; Jaffer, Mohamed A. ; Varsani, Arvind. / A Gel Filtration-Based Method for the Purification of Infectious Rotavirus Particles for Environmental Research Applications. In: Food and Environmental Virology. 2013 ; Vol. 5, No. 4. pp. 231-235.
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