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2014

Influenza Virus Drug Resistance: A Time-Sampled Population Genetics Perspective

Foll, M., Poh, Y. P., Renzette, N., Ferrer-Admetlla, A., Bank, C., Shim, H., Malaspinas, A. S., Ewing, G., Liu, P., Wegmann, D., Caffrey, D. R., Zeldovich, K. B., Bolon, D. N., Wang, J. P., Kowalik, T. F., Schiffer, C. A., Finberg, R. W. & Jensen, J. D., Feb 2014, In : PLoS genetics. 10, 2, e1004185.

Research output: Contribution to journalArticle

65 Scopus citations

Rates of influenza-like illness and winter school breaks, Chile, 2004-2010

Chowell, G., Towers, S., Viboud, C., Fuentes, R. & Sotomayor, V., Jul 2014, In : Emerging Infectious Diseases. 20, 7, p. 1203-1207 5 p.

Research output: Contribution to journalArticle

5 Scopus citations

Synthesizing data and models for the spread of MERS-CoV, 2013: Key role of index cases and hospital transmission

Chowell, G., Blumberg, S., Simonsen, L., Miller, M. A. & Viboud, C., 2014, In : Epidemics. 9, p. 40-51 12 p.

Research output: Contribution to journalArticle

63 Scopus citations
2015

Analyses of Merging Clinical and Viral Genetic Data for Influenza Surveillance

Magee, D., Beard, R. & Scotch, M., Jan 1 2015, In : AMIA ... Annual Symposium proceedings. AMIA Symposium. 2015, p. 1995-2004 10 p.

Research output: Contribution to journalArticle

Assessing the risk of observing multiple generations of middle east respiratory syndrome (MERS) cases given an imported case

Nishiura, H., Miyamatsu, Y., Chowell, G. & Saitoh, M., Jul 9 2015, In : Eurosurveillance. 20, 27, p. 6-11 6 p.

Research output: Contribution to journalArticle

Open Access
29 Scopus citations

Biophysical characterization of a vaccine candidate against HIV-1: The transmembrane and membrane proximal domains of HIV-1 gp41 as a maltose binding protein fusion

Gong, Z., Martin-Garcia, J. M., Daskalova, S. M., Craciunescu, F. M., Song, L., Dörner, K., Hansen, D., Yang, J. H., LaBaer, J., Hogue, B., Leket-Mor, T. & Fromme, P., Aug 21 2015, In : PloS one. 10, 8, e0136507.

Research output: Contribution to journalArticle

3 Scopus citations

Chemical-free inactivated whole influenza virus vaccine prepared by ultrashort pulsed laser treatment

Tsen, S. W. D., Donthi, N., La, V., Hsieh, W. H., Li, Y. D., Knoff, J., Chen, A., Wu, T. C., Hung, C. F., Achilefu, S. & Tsen, K-T., May 1 2015, In : Journal of biomedical optics. 20, 5, 051008.

Research output: Contribution to journalArticle

4 Scopus citations

Combining phylogeography and spatial epidemiology to uncover predictors of H5N1 influenza A virus diffusion

Magee, D., Beard, R., Suchard, M. A., Lemey, P. & Scotch, M., Jan 1 2015, In : Archives of virology. 160, 1, p. 215-224 10 p.

Research output: Contribution to journalArticle

16 Scopus citations

Comparison of immunogenicity in rhesus macaques of transmitted-founder, HIV-1 Group M consensus, and trivalent mosaic envelope vaccines formulated as a DNA prime, NYVAC, and envelope protein boost

Hulot, S. L., Korber, B., Giorgi, E. E., Vandergrift, N., Saunders, K. O., Balachandran, H., Mach, L. V., Lifton, M. A., Pantaleo, G., Tartaglia, J., Phogat, S., Jacobs, B., Kibler, K., Perdiguero, B., Gomez, C. E., Esteban, M., Rosati, M., Felber, B. K., Pavlakis, G. N., Parks, R. & 10 others, Lloyd, K., Sutherland, L., Scearce, R., Letvin, N. L., Seaman, M. S., Alam, S. M., Montefiori, D., Liao, H. X., Haynes, B. F. & Santra, S., 2015, In : Journal of virology. 89, 12, p. 6462-6480 19 p.

Research output: Contribution to journalArticle

27 Scopus citations

Coronavirus envelope (E) protein remains at the site of assembly

Venkatagopalan, P., Daskalova, S. M., Lopez, L. A., Dolezal, K. A. & Hogue, B., Apr 1 2015, In : Virology. 478, p. 75-85 11 p.

Research output: Contribution to journalArticle

27 Scopus citations

Derivatives of mesoxalic acid block translocation of HIV-1 reverse transcriptase

Bernatchez, J. A., Paul, R., Tchesnokov, E. P., Ngure, M., Beilhartz, G. L., Berghuis, A. M., Lavoie, R., Li, L., Auger, A., Melnyk, R. A., Grobler, J. A., Miller, M. D., Hazuda, D. J., Hecht, S. & Götte, M., Jan 16 2015, In : Journal of Biological Chemistry. 290, 3, p. 1474-1484 11 p.

Research output: Contribution to journalArticle

9 Scopus citations

Efficient generation of influenza virus with a mouse RNA polymerase I-driven all-in-one plasmid

Zhang, X. & Curtiss, R., Jun 22 2015, In : Virology Journal. 12, 1, 95.

Research output: Contribution to journalArticle

11 Scopus citations

Estimating the risk of Middle East respiratory syndrome (MERS) death during the course of the outbreak in the Republic of Korea, 2015

Mizumoto, K., Saitoh, M., Chowell, G., Miyamatsu, Y. & Nishiura, H., Oct 1 2015, In : International Journal of Infectious Diseases. 39, p. 7-9 3 p.

Research output: Contribution to journalArticle

23 Scopus citations

Evolution of 2014/15 H3N2 influenza viruses circulating in US: Consequences for vaccine effectiveness and possible new pandemic

Veljkovic, V., Paessler, S., Glisic, S., Prljic, J., Perovic, V. R., Veljkovic, N. & Scotch, M., 2015, In : Frontiers in Microbiology. 6, DEC, 01456.

Research output: Contribution to journalArticle

9 Scopus citations

Generation of influenza virus from avian cells infected by salmonella carrying the viral genome

Zhang, X., Kong, W., Wanda, S. Y., Xin, W., Alamuri, P. & Curtiss, R., Mar 5 2015, In : PloS one. 10, 3, e0119041.

Research output: Contribution to journalArticle

5 Scopus citations

Head-to-head comparison of poxvirus NYVAC and ALVAC vectors expressing identical HIV-1 clade C immunogens in prime-boost combination with Env protein in nonhuman primates

García-Arriaza, J., Perdiguero, B., Heeney, J., Seaman, M., Montefiori, D. C., Labranche, C., Yates, N. L., Shen, X., Tomaras, G. D., Ferrari, G., Foulds, K. E., McDermott, A., Kao, S. F., Roederer, M., Hawkins, N., Self, S., Yao, J., Farrell, P., Phogat, S., Tartaglia, J. & 12 others, Barnett, S. W., Burke, B., Cristillo, A., Weiss, D., Lee, C., Kibler, K., Jacobs, B., Asbach, B., Wagner, R., Ding, S., Pantaleo, G. & Esteban, M., 2015, In : Journal of virology. 89, 16, p. 8525-8539 15 p.

Research output: Contribution to journalArticle

29 Scopus citations

Identification of an avian polyomavirus associated with Adé lie penguins (pygoscelis adeliae)

Varsani, A., Porzig, E. L., Jennings, S., Kraberger, S., Farkas, K., Julian, L., Massaro, M., Ballard, G. & Ainley, D. G., Apr 1 2015, In : Journal of General Virology. 96, 4, p. 851-857 7 p.

Research output: Contribution to journalArticle

24 Scopus citations

Intense seasonal A/H1N1 influenza in Mexico, winter 2013-2014

Dávila-Torres, J., Chowell, G., Borja-Aburto, V. H., Viboud, C., Grajalez-Muñiz, C. & Miller, M. A., 2015, In : Archives of Medical Research. 46, 1, p. 63-70 8 p.

Research output: Contribution to journalArticle

10 Scopus citations

Occurrence of Noroviruses and Their Correlation with Microbial Indicators in Raw Milk

Yavarmanesh, M., Alum, A. & Abbaszadegan, M., Sep 10 2015, In : Food and Environmental Virology. 7, 3, p. 232-238 7 p.

Research output: Contribution to journalArticle

3 Scopus citations

Optimal strategies for controlling the MERS coronavirus during a mass gathering

Malik, T. M., Alsaleh, A. A., Gumel, A. & Safi, M. A., 2015, In : Global Journal of Pure and Applied Mathematics. 11, 6, p. 4831-4865 35 p.

Research output: Contribution to journalArticle

2 Scopus citations

Positive selection drives preferred segment combinations during influenza virus reassortment

Zeldovich, K. B., Liu, P., Renzette, N., Foll, M., Pham, S. T., Venev, S. V., Gallagher, G. R., Bolon, D. N., Kurt-Jones, E. A., Jensen, J. D., Caffrey, D. R., Schiffer, C. A., Kowalik, T. F., Wang, J. P. & Finberg, R. W., Jun 1 2015, In : Molecular biology and evolution. 32, 6, p. 1519-1532 14 p.

Research output: Contribution to journalArticle

11 Scopus citations

Real-time characterization of risks of death associated with the Middle East respiratory syndrome (MERS) in the Republic of Korea, 2015

Mizumoto, K., Endo, A., Chowell, G., Miyamatsu, Y., Saitoh, M. & Nishiura, H., Sep 30 2015, In : BMC Medicine. 13, 1, 228.

Research output: Contribution to journalArticle

16 Scopus citations

Some Simple Nosocomial Disease Transmission Models

Brauer, F., Mar 1 2015, In : Bulletin of mathematical biology. 77, 3, p. 460-469 10 p.

Research output: Contribution to journalArticle

3 Scopus citations

TCR contact residue hydrophobicity is a hallmark of immunogenic CD8+ T cell epitopes

Chowell, D., Krishna, S., Becker, P. D., Cocita, C., Shu, J., Tan, X., Greenberg, P. D., Klavinskis, L. S., Blattman, J. & Anderson, K., Apr 7 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 14, p. E1754-E1762

Research output: Contribution to journalArticle

66 Scopus citations

Transmission characteristics of MERS and SARS in the healthcare setting: A comparative study

Chowell, G., Abdirizak, F., Lee, S., Lee, J., Jung, E., Nishiura, H. & Viboud, C., Sep 3 2015, In : BMC Medicine. 13, 1, 210.

Research output: Contribution to journalArticle

140 Scopus citations