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• Assessing the impact of public health interventions on the transmission of pandemic H1N1 influenza a virus aboard a Peruvian navy ship

  Vera, D. M., Hora, R. A., Murillo, A., Wong, J. F., Torre, A. J., Wang, D., Boulay, D., Hancock, K., Katz, J. M., Ramos, M., Loayza, L., Quispe, J., Reaves, E. J., Bausch, D. G., Chowell, G. & Montgomery, J. M., May 2014, In: Influenza and other Respiratory Viruses. 8, 3, p. 353-359 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Ships
  • H1N1 Subtype Influenza A Virus
  • Pandemics
  • Orthomyxoviridae
  • Human Influenza
  9 Scopus citations

• The status, quality, and expansion of the NIH full-length cDNA project: The Mammalian Gene Collection (MGC)

  Gerhard, D. S., Wagner, L., Feingold, E. A., Shenmen, C. M., Grouse, L. H., Schuler, G., Klein, S. L., Old, S., Rasooly, R., Good, P., Guyer, M., Peck, A. M., Derge, J. G., Lipman, D., Collins, F. S., Jang, W., Sherry, S., Feolo, M., Misquitta, L., Lee, E. & 95 others, Rotmistrovsky, K., Greenhut, S. F., Schaefer, C. F., Buetow, K. H., Bonner, T. I., Haussler, D., Kent, J., Diekhans, M., Furey, T., Brent, M., Prange, C., Schreiber, K., Shapiro, N., Bhat, N. K., Hopkins, R. F., Hsie, F., Driscoll, T., Soares, M. B., Bonaldo, M. F., Casavant, T. L., Scheetz, T. E., Brownstein, M. J., Usdin, T. B., Toshiyuki, S., Carninci, P., Piao, Y., Dudekula, D. B., Ko, M. S. H., Kawakami, K., Suzuki, Y., Sugano, S., Gruber, C. E., Smith, M. R., Simmons, B., Moore, T., Waterman, R., Johnson, S. L., Ruan, Y., Lin Wei, C., Mathavan, S., Gunaratne, P. H., Wu, J., Garcia, A. M., Hulyk, S. W., Fuh, E., Yuan, Y., Sneed, A., Kowis, C., Hodgson, A., Muzny, D. M., McPherson, J., Gibbs, R. A., Fahey, J., Helton, E., Ketteman, M., Madan, A., Rodrigues, S., Sanchez, A., Whiting, M., Madan, A., Young, A. C., Wetherby, K. D., Granite, S. J., Kwong, P. N., Brinkley, C. P., Pearson, R. L., Bouffard, G. G., Blakesly, R. W., Green, E. D., Dickson, M. C., Rodriguez, A. C., Grimwood, J., Schmutz, J., Myers, R. M., Butterfield, Y. S. N., Griffith, M., Griffith, O. L., Krzywinski, M. I., Liao, N., Morrin, R., Palmquist, D., Petrescu, A. S., Skalska, U., Smailus, D. E., Stott, J. M., Schnerch, A., Schein, J. E., Jones, S. J. M., Holt, R. A., Baross, A., Marra, M. A., Clifton, S., Makowski, K. A., Bosak, S. & Malek, J., Oct 2004, In: Genome research. 14, 10 B, p. 2121-2127 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Complementary DNA
  • Clone Cells
  • Genes
  • Open Reading Frames
  • Expressed Sequence Tags
  382 Scopus citations

• A high-precision rule-based extraction system for expanding geospatial metadata in GenBank records

  Tahsin, T., Weissenbacher, D., Rivera, R., Beard, R., Firago, M., Wallstrom, G., Scotch, M. & Gonzalez, G., Sep 1 2016, In: Journal of the American Medical Informatics Association. 23, 5, p. 934-941 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Metadata
  • Nucleic Acid Databases
  • Influenza A virus
  • Information Storage and Retrieval
  • Databases
  11 Scopus citations

• Subcellular localization of SARS-CoV structural proteins

  Lopez, L. A., Jones, A., Arndt, W. D. & Hogue, B., 2006, The Nidoviruses: Toward Control of SARS and other Nidovirus Diseases. Springer New York, p. 297-300 4 p. (Advances in Experimental Medicine and Biology; vol. 581).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
  4 Scopus citations

• Transmission potential of the new influenza A(H1N1) virus and its age-specificity in Japan.

  Nishiura, H., Castillo-Chavez, C., Safan, M. & Chowell, G., Jun 4 2009, In: Euro surveillance : bulletin européen sur les maladies transmissibles = European communicable disease bulletin. 14, 22

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Minors
  • H1N1 Subtype Influenza A Virus
  • Influenza A virus
  • Japan
  • Reproduction
  183 Scopus citations

• Inferring demography and selection in organisms characterized by skewed offspring distributions

  Sackman, A. M., Harris, R. B. & Jensen, J., Mar 2019, In: Genetics. 211, 3, p. 1019-1028 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Aquatic Organisms
  • Demography
  • Metagenomics
  • Population Genetics
  • Influenza A virus
  5 Scopus citations

• Transmission potential of influenza A/H7N9, February to May 2013, China

  Chowell, G., Simonsen, L., Towers, S., Miller, M. A. & Viboud, C., Oct 2 2013, In: BMC Medicine. 11, 1, 214.

  Research output: Contribution to journal › Article › peer-review

  • Human Influenza
  • China
  • Bayes Theorem
  • Birds
  • Zoonoses
  37 Scopus citations

• A Balance between Inhibitor Binding and Substrate Processing Confers Influenza Drug Resistance

  Jiang, L., Liu, P., Bank, C., Renzette, N., Prachanronarong, K., Yilmaz, L. S., Caffrey, D. R., Zeldovich, K. B., Schiffer, C. A., Kowalik, T. F., Jensen, J. D., Finberg, R. W., Wang, J. P. & Bolon, D. N. A., Feb 13 2016, In: Journal of molecular biology. 428, 3, p. 538-553 16 p.

  Research output: Contribution to journal › Article › peer-review

  • Oseltamivir
  • Neuraminidase
  • Drug Resistance
  • Human Influenza
  • Influenza A virus
  18 Scopus citations

• Tumorigenic poxviruses: Genomic organization and dna sequence of the telomeric region of the shope fibroma virus genome

  Upton, C., DeLange, A. M. & McFadden, G., Sep 1987, In: Virology. 160, 1, p. 20-30 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Rabbit Fibroma Virus
  • Poxviridae
  • Open Reading Frames
  • Genome
  • Terminal Repeat Sequences
  53 Scopus citations

• Human vs. animal outbreaks of the 2009 swine-origin H1N1 influenza A epidemic

  Scotch, M., Brownstein, J. S., Vegso, S., Galusha, D. & Rabinowitz, P., Sep 2011, In: EcoHealth. 8, 3, p. 376-380 5 p.

  Research output: Contribution to journal › Article › peer-review

  • influenza
  • animal disease
  • Human Influenza
  • human disease
  • Disease Outbreaks
  7 Scopus citations

• Lessons from Nigeria: The role of roads in the geo-temporal progression of avian influenza (H5N1) virus

  Rivas, A. L., Chowell, G., Schwager, S. J., Fasina, F. O., Hoogesteijn, A. L., Smith, S. D., Bisschop, S. P. R., Anderson, K. L. & Hyman, J. M., Feb 2010, In: Epidemiology and Infection. 138, 2, p. 192-198 7 p.

  Research output: Contribution to journal › Article › peer-review

  • H5N1 Subtype Influenza A Virus
  • Influenza in Birds
  • Nigeria
  • Orthomyxoviridae
  • Epidemics
  24 Scopus citations

• Global Mortality Estimates for the 2009 Influenza Pandemic from the GLaMOR Project: A Modeling Study

  Simonsen, L., Spreeuwenberg, P., Lustig, R., Taylor, R. J., Fleming, D. M., Kroneman, M., Van Kerkhove, M. D., Mounts, A. W., Paget, W. J., Echenique, H., Savy, V., Muscatello, D., MacIntyre, C. R., Dwyer, D. E., Azziz-Baumgartner, E., Homaira, N., Moura, F. E. A., Schuck, C., Akwar, H., Schanzer, D. & 63 others, Fuentes, R., Olea, A., Sotomayor, V., Feng, L., Yu, H., Mazick, A., Mølbak, K., Nielsen, J., Carrat, F., Lemaitre, M., Buchholz, U., Schweiger, B., Höhle, M., Vesenbeckh, S., Cowling, B., Leung, G., Tsang, T., Chuang, S. K., Bromberg, M., Kaufman, Z., Sugaya, N., Oka Ezoe, K., Hayashi, S., Matsuda, M., Lopez-Gatell, H., Alpuche-Aranda, C., Noyola, D., Chowell, G., van Asten, L., Meijer, A., van den Wijngaard, K., van der Sande, M., Baker, M., Zhang, J., Benavides, J. G., Munayco, C., Laguna-Torres, A., Rabczenko, D., Wojtyniak, B., Park, S. H., Lee, Y. K., Zolotusca, L., Popovici, O., Popescu, R., Ang, L. W., Cutter, J., Lin, R., Ma, S., Chen, M., Lee, V. J., Prosenc, K., Socan, M., Cohen, C., Larrauri, A., de Mateo, S., Méndez, L. S., Sanz, C. D., Andrews, N., Green, H. K., Pebody, R., Saei, A., Shay, D. & Viboud, C., Nov 2013, In: PLoS Medicine. 10, 11, e1001558.

  Research output: Contribution to journal › Article › peer-review

  • Pandemics
  • Human Influenza
  • Virology
  • Mortality
  • Health
  221 Scopus citations

• The function and evolution of the restriction factor viperin in primates was not driven by lentiviruses

  Lim, E. S., Wu, L. I., Malik, H. S. & Emerman, M., Jun 26 2012, In: Retrovirology. 9, 55.

  Research output: Contribution to journal › Article › peer-review

  • Lentivirus
  • Primates
  • Retroviridae
  • Virus Release
  • Interferons
  21 Scopus citations

• Incorporating sampling uncertainty in the geospatial assignment of taxa for virus phylogeography

  Scotch, M., Tahsin, T., Weissenbacher, D., O'Connor, K., Magge, A., Vaiente, M., Suchard, M. A. & Gonzalez-Hernandez, G., Mar 8 2019, In: Virus Evolution. 5, 1, vey043.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Phylogeography
  • Uncertainty
  • Viruses
  • Heuristics
  • Language
  3 Scopus citations

• The need for interdisciplinary studies of historic pandemics

  Simonsen, L., Viboud, C., Chowell, G., Andreasen, V., Olson, D. R., Parekh, V., Mølbak, K. & Miller, M. A., Jul 22 2011, In: Vaccine. 29, SUPPL. 2, p. B1-B5

  Research output: Contribution to journal › Editorial › peer-review
  7 Scopus citations

• Mathematical assessment of Canada's pandemic influenza preparedness plan

  Gumel, A. B., Nuño, M. & Chowell, G., 2008, In: Canadian Journal of Infectious Diseases and Medical Microbiology. 19, 2, p. 185-192 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Pandemics
  • Human Influenza
  • Canada
  • Vaccines
  • Antiviral Agents
  10 Scopus citations

• Dynamics of two-strain influenza with isolation and partial cross-immunity

  Nuño, M., Feng, Z., Martcheva, M. & Castillo-Chavez, C., 2005, In: SIAM Journal on Applied Mathematics. 65, 3, p. 964-982 19 p.

  Research output: Contribution to journal › Article › peer-review

  • Influenza
  • Isolation
  • Coexistence
  • Partial
  • Hopf bifurcation
  87 Scopus citations

• The influence of climatic conditions on the transmission dynamics of the 2009 A/H1N1 influenza pandemic in Chile

  Chowell, G., Towers, S., Viboud, C., Fuentes, R., Sotomayor, V., Simonsen, L., Miller, M. A., Lima, M., Villarroel, C., Chiu, M., Villarroel, J. E. & Olea, A., Nov 13 2012, In: BMC Infectious Diseases. 12, 298.

  Research output: Contribution to journal › Article › peer-review

  • Pandemics
  • Human Influenza
  • Reproduction
  • Demography
  • Temperature
  33 Scopus citations

• Intense seasonal A/H1N1 influenza in Mexico, winter 2013-2014

  Dávila-Torres, J., Chowell, G., Borja-Aburto, V. H., Viboud, C., Grajalez-Muñiz, C. & Miller, M. A., 2015, In: Archives of Medical Research. 46, 1, p. 63-70 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Mexico
  • Human Influenza
  • Pandemics
  • Hospitalization
  • Respiratory Tract Infections
  12 Scopus citations

• Characterizing the Epidemiology of the 2009 Influenza A/H1N1 Pandemic in Mexico

  Chowell, G., Echevarría-Zuno, S., Viboud, C., Simonsen, L., Tamerius, J., Miller, M. A. & Borja-AburtoVí, V. H., May 2011, In: PLoS Medicine. 8, 5, e1000436.

  Research output: Contribution to journal › Article › peer-review

  • Epidemiology
  • Mexico
  • Pandemics
  • Human Influenza
  • Viruses
  143 Scopus citations

• Recrudescent wave of pandemic A/H1N1 influenza in Mexico, winter 2011-2012: Age shift and severity

  Chowell, G., Echevarría-Zuno, S., Viboud, C., Simonsen, L., Grajales Muñiz, C., Rascón Pacheco, R. A., González León, M. & Borja Aburto, V. H., Oct 19 2012, In: PLoS Currents. e4f7a1dd84b3ee.

  Research output: Contribution to journal › Article › peer-review

  • Mexico
  • Pandemics
  • Human Influenza
  • Hospitalization
  • Respiratory Tract Infections
  19 Scopus citations

• Molecular Basis for Differential Patterns of Drug Resistance in Influenza N1 and N2 Neuraminidase

  Prachanronarong, K. L., Özen, A., Thayer, K. M., Yilmaz, L. S., Zeldovich, K. B., Bolon, D. N., Kowalik, T. F., Jensen, J., Finberg, R. W., Wang, J. P., Kurt-Yilmaz, N. & Schiffer, C. A., Dec 13 2016, In: Journal of Chemical Theory and Computation. 12, 12, p. 6098-6108 11 p.

  Research output: Contribution to journal › Article › peer-review

  • influenza
  • Neuraminidase
  • drugs
  • inhibitors
  • Substrates
  12 Scopus citations

• A novel papillomavirus in Adélie penguin (Pygoscelis adeliae) faeces sampled at the Cape Crozier colony, Antarctica

  Varsani, A., Kraberger, S., Jennings, S., Porzig, E. L., Julian, L., Massaro, M., Pollard, A., Ballard, G. & Ainley, D. G., Jun 2014, In: Journal of General Virology. 95, PART 6, p. 1352-1365 14 p.

  Research output: Contribution to journal › Article › peer-review

  • Spheniscidae
  • Antarctic Regions
  • Feces
  • Genome
  • Avulavirus
  33 Scopus citations

• Viruses associated with Antarctic wildlife: From serology based detection to identification of genomes using high throughput sequencing

  Smeele, Z. E., Ainley, D. G. & Varsani, A., Jan 2 2018, In: Virus research. 243, p. 91-105 15 p.

  Research output: Contribution to journal › Review article › peer-review

  • Antarctic Regions
  • Serology
  • Spheniscidae
  • Genome
  • Viruses
  15 Scopus citations

• Bayesian uncertainty quantification for transmissibility of influenza, norovirus and Ebola using information geometry

  House, T., Ford, A., Lan, S., Bilson, S., Buckingham-Jeffery, E. & Girolami, M., Aug 1 2016, In: Journal of the Royal Society Interface. 13, 121, 20160279.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Norovirus
  • Uncertainty
  • Human Influenza
  • Ebola Hemorrhagic Fever
  • Virus Shedding
  6 Scopus citations