Peiming Zhang

Research Professor

  • 2085 Citations
  • 24 h-Index
1991 …2020
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Research Output 1991 2019

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Article
2019

Role of contacts in long-range protein conductance

Zhang, B., Song, W., Pang, P., Lai, H., Chen, Q., Zhang, P. & Lindsay, S., Jan 1 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 13, p. 5886-5891 6 p.

Research output: Contribution to journalArticle

Open Access
Electrodes
Proteins
Ebolavirus
Ligands
HIV Antibodies
2018

A Y-Shaped Three-Arm Structure for Probing Bivalent Interactions between Protein Receptor-Ligand Using AFM and SPR

Senapati, S., Biswas, S., Manna, S., Ros, R., Lindsay, S. & Zhang, P., Jun 12 2018, In : Langmuir. 34, 23, p. 6930-6940 11 p.

Research output: Contribution to journalArticle

Streptavidin
Surface plasmon resonance
surface plasmon resonance
biotin
Atomic force microscopy

Recognition Tunneling of Canonical and Modified RNA Nucleotides for Their Identification with the Aid of Machine Learning

Im, J. O., Sen, S., Lindsay, S. & Zhang, P., Apr 15 2018, (Accepted/In press) In : ACS Nano.

Research output: Contribution to journalArticle

machine learning
nucleotides
Nucleotides
RNA
Learning systems
2 Citations (Scopus)

Traceless staudinger ligation for biotinylation of acetylated thiol-azido heterobifunctional linker and its attachment to gold surface

Senapati, S., Biswas, S. & Zhang, P., Jan 1 2018, In : Current Organic Chemistry. 22, 4, p. 411-415 5 p.

Research output: Contribution to journalArticle

Sulfhydryl Compounds
Gold
Monolayers
Self assembled monolayers
Biotin
2016
4 Citations (Scopus)

Antibacterial properties of multi-walled carbon nanotubes decorated with silver nanoparticles

Liu, Y. Z., Hu, Y. T., Chen, R. S., Zhan, W. T., Ni, H. W., Zhang, P. & Liang, F., Aug 1 2016, In : Current Nanoscience. 12, 4, p. 411-415 5 p.

Research output: Contribution to journalArticle

Carbon Nanotubes
Silver
Nanoparticles
Carbon nanotubes
Escherichia coli
7 Citations (Scopus)

Electronic single-molecule identification of carbohydrate isomers by recognition tunnelling

Im, J. O., Biswas, S., Liu, H., Zhao, Y., Sen, S., Biswas, S., Ashcroft, B., Borges, C., Wang, X., Lindsay, S. & Zhang, P., Dec 21 2016, In : Nature Communications. 7, 13868.

Research output: Contribution to journalArticle

carbohydrates
sugars
Sugars
Isomers
Polysaccharides
6 Citations (Scopus)

Universal Readers Based on Hydrogen Bonding or π-π Stacking for Identification of DNA Nucleotides in Electron Tunnel Junctions

Biswas, S., Sen, S., Im, J. O., Biswas, S., Krstic, P., Ashcroft, B., Borges, C., Zhao, Y., Lindsay, S. & Zhang, P., Dec 27 2016, In : ACS Nano. 10, 12, p. 11304-11316 13 p.

Research output: Contribution to journalArticle

Tunnel junctions
nucleotides
readers
Nucleotides
tunnel junctions
2015
8 Citations (Scopus)
Atomic Force Microscopy
Silicon
Scaffolds
Atomic force microscopy
Arm
6 Citations (Scopus)

Click Addition of a DNA Thread to the N-Termini of Peptides for Their Translocation through Solid-State Nanopores

Biswas, S., Song, W., Borges, C., Lindsay, S. & Zhang, P., Sep 12 2015, In : ACS Nano. 9, 10, p. 9652-9664 13 p.

Research output: Contribution to journalArticle

Nanopores
threads
Peptides
peptides
DNA
12 Citations (Scopus)

Nanopore DNA sequencing: Are we there yet?

Liang, F. & Zhang, P., Feb 9 2015, In : Science Bulletin. 60, 3, p. 296-303 8 p.

Research output: Contribution to journalArticle

Nanopores
DNA
Molecules
DNA sequences
Amplification
2014
7 Citations (Scopus)

Detection of molecular binding via charge-induced mechanical response of optical fibers

Guan, Y., Shan, X., Wang, S., Zhang, P. & Tao, N., Nov 1 2014, In : Chemical Science. 5, 11, p. 4375-4381 7 p.

Research output: Contribution to journalArticle

Optical fibers
Molecules
Labels
Molecular interactions
Pharmaceutical Preparations
25 Citations (Scopus)

Fixed-gap tunnel junction for reading DNA nucleotides

Pang, P., Ashcroft, B. A., Song, W., Zhang, P., Biswas, S., Qing, Q., Yang, J., Nemanich, R., Bai, J., Smith, J. T., Reuter, K., Balagurusamy, V. S. K., Astier, Y., Stolovitzky, G. & Lindsay, S., Dec 23 2014, In : ACS Nano. 8, 12, p. 11994-12003 10 p.

Research output: Contribution to journalArticle

Tunnel junctions
nucleotides
Nucleotides
tunnel junctions
DNA
86 Citations (Scopus)

Single-molecule spectroscopy of amino acids and peptides by recognition tunnelling

Zhao, Y., Ashcroft, B., Zhang, P., Liu, H., Sen, S., Song, W., Im, J., Gyarfas, B., Manna, S., Biswas, S., Borges, C. & Lindsay, S., 2014, In : Nature Nanotechnology. 9, 6, p. 466-473 8 p.

Research output: Contribution to journalArticle

Peptides
peptides
amino acids
Amino acids
Spectroscopy
2013
21 Citations (Scopus)

Application of catalyst-free click reactions in attaching affinity molecules to tips of atomic force microscopy for detection of protein biomarkers

Senapati, S., Manna, S., Lindsay, S. & Zhang, P., Nov 26 2013, In : Langmuir. 29, 47, p. 14622-14630 9 p.

Research output: Contribution to journalArticle

biomarkers
Biomarkers
affinity
Atomic force microscopy
atomic force microscopy
35 Citations (Scopus)

Slowing DNA translocation through a nanopore using a functionalized electrode

Krishnakumar, P., Gyarfas, B., Song, W., Sen, S., Zhang, P., Krstić, P. & Lindsay, S., Nov 26 2013, In : ACS Nano. 7, 11, p. 10319-10326 8 p.

Research output: Contribution to journalArticle

Nanopores
Single-Stranded DNA
Monolayers
Hydrogen bonds
DNA
13 Citations (Scopus)

Universal base analogues and their applications in DNA sequencing technology

Liang, F., Liu, Y. Z. & Zhang, P., Sep 21 2013, In : RSC Advances. 3, 35, p. 14910-14928 19 p.

Research output: Contribution to journalArticle

Molecular biology
DNA
Azoles
Molecular recognition
Biochemistry
2012
13 Citations (Scopus)
Electron tunneling
sequencing
readers
diamines
electron tunneling

Biography of Stuart Lindsay.

Tao, N., Nagahara, L., Thundat, T. & Zhang, P., Apr 25 2012, In : Journal of physics. Condensed matter : an Institute of Physics journal. 24, 16, p. 160401 1 p.

Research output: Contribution to journalArticle

Biophysics
biophysics
26 Citations (Scopus)

Chemical recognition and binding kinetics in a functionalized tunnel junction

Chang, S., Huang, S., Liu, H., Zhang, P., Liang, F., Akahori, R., Li, S., Gyarfas, B., Shumway, J., Ashcroft, B., He, J. & Lindsay, S., Jun 15 2012, In : Nanotechnology. 23, 23, 235101.

Research output: Contribution to journalArticle

Tunnel junctions
Molecules
Kinetics
DNA
Cytosine
17 Citations (Scopus)

Effects of cytosine methylation on DNA charge transport

Hihath, J., Guo, S., Zhang, P. & Tao, N., Apr 25 2012, In : Journal of Physics Condensed Matter. 24, 16, 164204.

Research output: Contribution to journalArticle

methylation
Methylation
Cytosine
DNA Methylation
Charge transfer
13 Citations (Scopus)

Palladium electrodes for molecular tunnel junctions

Chang, S., Sen, S., Zhang, P., Gyarfas, B., Ashcroft, B., Lefkowitz, S., Peng, H. & Lindsay, S., Oct 26 2012, In : Nanotechnology. 23, 42, 425202.

Research output: Contribution to journalArticle

Tunnel junctions
Palladium
Silicon
Metals
Electrodes
23 Citations (Scopus)
Hydrogen bonds
DNA
Nuclear magnetic resonance
Molecular recognition
Nanopores
2011
7 Citations (Scopus)

A nanocontact printing system for sub-100nm aligned patterning

Takulapalli, B. R., Morrison, M. E., Gu, J. & Zhang, P., Jul 15 2011, In : Nanotechnology. 22, 28, 285302.

Research output: Contribution to journalArticle

Printing
Patents and inventions
Nanotechnology
Nucleosides
Microfluidics
27 Citations (Scopus)

Gap distance and interactions in a molecular tunnel junction

Chang, S., He, J., Zhang, P., Gyarfas, B. & Lindsay, S., Sep 14 2011, In : Journal of the American Chemical Society. 133, 36, p. 14267-14269 3 p.

Research output: Contribution to journalArticle

Tunnel junctions
Electrodes
Surface Tension
DNA sequences
Reading
2010
123 Citations (Scopus)

Electronic signatures of all four DNA nucleosides in a tunneling gap

Chang, S., Huang, S., He, J., Liang, F., Zhang, P., Li, S., Chen, X., Sankey, O. & Lindsay, S., Mar 10 2010, In : Nano Letters. 10, 3, p. 1070-1075 6 p.

Research output: Contribution to journalArticle

nucleosides
Nucleosides
DNA
deoxyribonucleic acid
signatures
169 Citations (Scopus)

Identifying single bases in a DNA oligomer with electron tunnelling

Huang, S., He, J., Chang, S., Zhang, P., Liang, F., Li, S., Tuchband, M., Fuhrmann, A., Ros, R. & Lindsay, S., Dec 2010, In : Nature Nanotechnology. 5, 12, p. 868-873 6 p.

Research output: Contribution to journalArticle

Electron tunneling
electron tunneling
oligomers
Oligomers
DNA
33 Citations (Scopus)

Measuring surface charge density and particle height using surface plasmon resonance technique

Shan, X., Huang, X., Foley, K. J., Zhang, P., Chen, K., Wang, S. & Tao, N., 2010, In : Analytical Chemistry. 82, 1, p. 234-240 7 p.

Research output: Contribution to journalArticle

Surface plasmon resonance
Surface charge
Charge density
Charged particles
Coulomb interactions
54 Citations (Scopus)

Recognition tunneling

Lindsay, S., He, J., Sankey, O., Hapala, P., Jelinek, P., Zhang, P., Chang, S. & Huang, S., 2010, In : Nanotechnology. 21, 26, 262001.

Research output: Contribution to journalArticle

Molecules
Electrodes
Tunnel junctions
Tunnels
DNA
19 Citations (Scopus)

Recognition tunneling measurement of the conductance of DNA bases embedded in self-assembled monolayers

Huang, S., Chang, S., He, J., Zhang, P., Liang, F., Tuchband, M., Li, S. & Lindsay, S., Dec 9 2010, In : Journal of Physical Chemistry C. 114, 48, p. 20443-20448 6 p.

Research output: Contribution to journalArticle

Self assembled monolayers
Hydrogen
DNA
deoxyribonucleic acid
Gold
2009
17 Citations (Scopus)

A hydrogen-bonded electron-tunneling circuit reads the base composition of unmodified DNA

He, J., Lin, L., Liu, H., Zhang, P., Lee, M., Sankey, O. F. & Lindsay, S., 2009, In : Nanotechnology. 20, 7, 075102.

Research output: Contribution to journalArticle

Electron tunneling
Hydrogen
DNA
Tunnel junctions
Networks (circuits)
21 Citations (Scopus)

Tunnel conductance of Watson-Crick nucleoside-base pairs from telegraph noise

Chang, S., He, J., Lin, L., Zhang, P., Liang, F., Young, M., Huang, S. & Lindsay, S., 2009, In : Nanotechnology. 20, 18, 185102.

Research output: Contribution to journalArticle

Telegraph
Nucleosides
Tunnels
DNA
Readout systems
95 Citations (Scopus)

Tunnelling readout of hydrogen-bonding-based recognition

Chang, S., He, J., Kibel, A., Lee, M., Sankey, O., Zhang, P. & Lindsay, S., May 2009, In : Nature Nanotechnology. 4, 5, p. 297-301 5 p.

Research output: Contribution to journalArticle

readout
Hydrogen bonds
hydrogen
hydrogen bonds
Molecular recognition
2008
17 Citations (Scopus)

An AFM/rotaxane molecular reading head for sequence-dependent DNA structures

Ashcroft, B. A., Spadola, Q., Qamar, S., Zhang, P., Kada, G., Bension, R. & Lindsay, S., Sep 2008, In : Small. 4, 9, p. 1468-1475 8 p.

Research output: Contribution to journalArticle

Rotaxanes
Reading
DNA
Head
Nanopores
17 Citations (Scopus)

A new approach to fabricating high density nanoarrays by nanocontact printing

Gu, J., Xiao, X., Takulapalli, B. R., Morrison, M. E., Zhang, P. & Zenhausern, F., 2008, In : Journal of Vacuum Science and Technology B: Microelectronics and Nanometer Structures. 26, 6, p. 1860-1865 6 p.

Research output: Contribution to journalArticle

printing
Printing
Nanoimprint lithography
Masks
Multilayers
17 Citations (Scopus)

Transverse tunneling through DNA hydrogen bonded to an electrode

He, J., Lin, L., Zhang, P., Spadola, Q., Xi, Z., Fu, Q. & Lindsay, S., Aug 2008, In : Nano Letters. 8, 8, p. 2530-2534 5 p.

Research output: Contribution to journalArticle

Hydrogen
DNA
deoxyribonucleic acid
Guanidine
Electrodes
2007
67 Citations (Scopus)

Identification of DNA basepairing via tunnel-current decay

He, J., Lin, L., Zhang, P. & Lindsay, S., Dec 2007, In : Nano Letters. 7, 12, p. 3854-3858 5 p.

Research output: Contribution to journalArticle

tunnels
Tunnels
DNA
deoxyribonucleic acid
Electrodes
22 Citations (Scopus)

Thermal and electrochemical gate effects on DNA conductance

Hihath, J., Chen, F., Zhang, P. & Tao, N., May 30 2007, In : Journal of Physics Condensed Matter. 19, 21, 215202.

Research output: Contribution to journalArticle

DNA
deoxyribonucleic acid
Charge transfer
Sulfhydryl Compounds
thiols
2006
49 Citations (Scopus)

Tuning the chemical selectivity of SWNT-FETs for detection of heavy-metal ions

Forzani, E., Li, X., Zhang, P., Tao, N., Zhang, R., Amlani, I., Tsui, R. & Nagahara, L. A., Nov 2006, In : Small. 2, 11, p. 1283-1291 9 p.

Research output: Contribution to journalArticle

Heavy Ions
Carbon Nanotubes
Single-walled carbon nanotubes (SWCN)
Field effect transistors
Heavy Metals
2005
111 Citations (Scopus)

Study of single-nucleotide polymorphisms by means of electrical conductance measurements

Hihath, J., Xu, B., Zhang, P. & Tao, N., Nov 22 2005, In : Proceedings of the National Academy of Sciences of the United States of America. 102, 47, p. 16979-16983 5 p.

Research output: Contribution to journalArticle

Single Nucleotide Polymorphism
DNA
Base Pair Mismatch
Base Pairing
Electrodes
2004
369 Citations (Scopus)

Direct conductance measurement of single DNA molecules in aqueous solution

Xu, B., Zhang, P., Li, X. & Tao, N., Jun 2004, In : Nano Letters. 4, 6, p. 1105-1108 4 p.

Research output: Contribution to journalArticle

DNA
deoxyribonucleic acid
aqueous solutions
Molecules
molecules
2003
34 Citations (Scopus)

DNA polymerase template interactions probed by degenerate isosteric nucleobase analogs

Paul, N., Nashine, V. C., Hoops, G., Zhang, P., Zhou, J., Bergstrom, D. E. & Davisson, V. J., Sep 1 2003, In : Chemistry and Biology. 10, 9, p. 815-825 11 p.

Research output: Contribution to journalArticle

DNA-Directed DNA Polymerase
Azoles
Substrates
Hydrogen Bonding
Coulomb interactions
2001
7 Citations (Scopus)

Acceleration of nucleic acid hybridization on DNA microarrays driven by pH tunable modifications

Zhang, P., Briones, N., Liu, C. G., Brush, C. K., Powdrill, T., Belosludtsev, Y. & Hogan, M., 2001, In : Nucleosides, Nucleotides and Nucleic Acids. 20, 4-7, p. 1251-1254 4 p.

Research output: Contribution to journalArticle

Nucleic Acid Hybridization
Microarrays
Oligonucleotide Array Sequence Analysis
Nucleic Acids
Peptides
15 Citations (Scopus)

Conformations of nucleoside analogue 1-(2′-deoxy-β-D-ribofuranosyl)-1,2,4-triazole-3-carboxamide in different DNA sequence contexts

Klewer, D. A., Zhang, P., Bergstrom, D. E., Davisson, V. J. & LiWang, A. C., Feb 13 2001, In : Biochemistry. 40, 6, p. 1518-1527 10 p.

Research output: Contribution to journalArticle

DNA sequences
Nucleosides
Conformations
Protons
Oligodeoxyribonucleotides
2000
18 Citations (Scopus)

NMR structure of a DNA duplex containing nucleoside analog 1-(2'-deoxy-β-D-ribofuranosyl)-3-nitropyrrole and the structure of the unmodified control

Klewer, D. A., Hoskins, A., Zhang, P., Davisson, V. J., Bergstrom, D. E. & LiWang, A. C., Nov 15 2000, In : Nucleic Acids Research. 28, 22, p. 4514-4522 9 p.

Research output: Contribution to journalArticle

Nucleosides
Pyrroles
DNA
Molecular Dynamics Simulation
Magnetic Resonance Spectroscopy
1998
51 Citations (Scopus)

A comparative study of the thermal stability of oligodeoxyribonucleotides containing 5-substituted 2'-deoxyuridines

Ahmadian, M., Zhang, P. & Bergstrom, D. E., Jul 1 1998, In : Nucleic Acids Research. 26, 13, p. 3127-3135 9 p.

Research output: Contribution to journalArticle

Deoxyuridine
Oligodeoxyribonucleotides
Oligonucleotides
Sulfides
Hot Temperature
9 Citations (Scopus)

dsDNA stability dependence on pH and salt concentration

Bergstrom, D. E., Zhang, P. & Paul, N., 1998, In : BioTechniques. 24, 6, p. 992-994 3 p.

Research output: Contribution to journalArticle

Benzenesulfonates
Bromphenol Blue
pH
Sodium Chloride
Buffers
36 Citations (Scopus)

Exploratory studies on azole carboxamides as nucleobase analogs: Thermal denaturation studies on oligodeoxyribonucleotide duplexes containing pyrrole-3-carboxamide

Zhang, P., Johnson, W. T., Klewer, D., Paul, N., Hoops, G., Davisson, V. J. & Bergstrom, D. E., May 1 1998, In : Nucleic Acids Research. 26, 9, p. 2208-2215 8 p.

Research output: Contribution to journalArticle

Azoles
Pyrroles
Oligodeoxyribonucleotides
Hot Temperature
Amides
1997

1,3-Azolecarboxamide nucleobase analogs: Design, synthesis, and thermo dynamic studies

Bergstrom, D. E., Zhang, P., Johnson, W. T., Klewer, D., Paul, N., Hoops, G. C. & Jo Davisson, V., 1997, In : FASEB Journal. 11, 9

Research output: Contribution to journalArticle

Pyrroles
Triazoles
Oligodeoxyribonucleotides
Hydrogen Bonding
Oligonucleotides
52 Citations (Scopus)

Comparison of the base pairing properties of a series of nitroazole nucleobase analogs in the oligodeoxyribonucleotide sequence 5'-d(CGCXAATTYGCG)-3'

Bergstrom, D. E., Zhang, P. & Travis Johnson, W., 1997, In : Nucleic Acids Research. 25, 10, p. 1935-1942 8 p.

Research output: Contribution to journalArticle

Oligodeoxyribonucleotides
Nucleosides
Base Pairing
Oligonucleotides
Hot Temperature

Degenerate azole nucleosides direct the incorporation of mixtures of nucleotides in reactions catalyzed by thermostable DNA polymerases

Hoops, G. C., Zhang, P., Johnson, W. T., Paul, N., Chen, X., Bergstrom, D. E. & Davisson, V. J., 1997, In : FASEB Journal. 11, 9

Research output: Contribution to journalArticle

azoles
Azoles
nucleosides
DNA-directed DNA polymerase
DNA-Directed DNA Polymerase