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Research Output 1985 2019

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Article
2014
6 Citations (Scopus)

Recent advances of proteomics applied to human diseases

Thongboonkerd, V., LaBaer, J. & Domont, G. B., Nov 7 2014, In : Journal of Proteome Research. 13, 11, p. 4493-4496 4 p.

Research output: Contribution to journalArticle

Clinical Pathology
Proteomics
Disease Progression
3 Citations (Scopus)

Recombinant expression, purification, and biophysical characterization of the transmembrane and membrane proximal domains of HIV-1 gp41

Gong, Z., Kessans, S. A., Song, L., Dörner, K., Lee, H. H., Meador, L. R., LaBaer, J., Hogue, B., Leket-Mor, T. & Fromme, P., Nov 1 2014, In : Protein Science. 23, 11, p. 1607-1618 12 p.

Research output: Contribution to journalArticle

Purification
HIV-1
Membranes
Neutralizing Antibodies
Glycoproteins
74 Citations (Scopus)

The Hippo Transducer TAZ Interacts with the SWI/SNF Complex to Regulate Breast Epithelial Lineage Commitment

Skibinski, A., Breindel, J. L., Prat, A., Galván, P., Smith, E., Rolfs, A., Gupta, P. B., LaBaer, J. & Kuperwasser, C., Mar 27 2014, In : Cell Reports. 6, 6, p. 1059-1072 14 p.

Research output: Contribution to journalArticle

Transducers
Breast
Cells
Tissue
Gene expression
2013
27 Citations (Scopus)

A versatile protein microarray platform enabling antibody profiling against denatured proteins

Wang, J., Barker, K., Steel, J., Park, J., Saul, J., Festa, F., Wallstrom, G., Yu, X., Bian, X., Anderson, K., Figueroa, J. D., LaBaer, J. & Qiu, J., Jun 2013, In : Proteomics - Clinical Applications. 7, 5-6, p. 378-383 6 p.

Research output: Contribution to journalArticle

Protein Array Analysis
Microarrays
Antibodies
Proteins
HeLa Cells
24 Citations (Scopus)

Biomarker discovery for heterogeneous diseases

Wallstrom, G., Anderson, K. & LaBaer, J., May 2013, In : Cancer Epidemiology Biomarkers and Prevention. 22, 5, p. 747-755 9 p.

Research output: Contribution to journalArticle

Biomarkers
Sample Size
Proteomics
Tumor Biomarkers
Early Diagnosis
18 Citations (Scopus)

Conductometric monitoring of protein-protein interactions

Spera, R., Festa, F., Bragazzi, N. L., Pechkova, E., LaBaer, J. & Nicolini, C., Dec 6 2013, In : Journal of Proteome Research. 12, 12, p. 5535-5547 13 p.

Research output: Contribution to journalArticle

Protein Array Analysis
Nucleic Acids
Quartz
Monitoring
Proteins
37 Citations (Scopus)

Emerging protein array technologies for proteomics

Lee, J. R., Magee, D., Gaster, R. S., LaBaer, J. & Wang, S. X., Feb 2013, In : Expert Review of Proteomics. 10, 1, p. 65-75 11 p.

Research output: Contribution to journalArticle

Protein Array Analysis
Proteomics
Technology
Proteins
Gene expression
24 Citations (Scopus)

High-throughput cloning and expression library creation for functional proteomics

Festa, F., Steel, J., Bian, X. & LaBaer, J., May 2013, In : Proteomics. 13, 9, p. 1381-1399 19 p.

Research output: Contribution to journalArticle

Cloning
Proteomics
Organism Cloning
Throughput
Assays

Laboratory automation advances high throughput bio-inspired research into personalised medicine

LaBaer, J., Jun 2013, In : Drug Discovery World. 14, 3, p. 23-30 8 p.

Research output: Contribution to journalArticle

Laboratory Automation
Precision Medicine
Informatics
Biotechnology
Research
6 Citations (Scopus)

Mass spectrometry and florescence analysis of Snap-Nappa arrays expressed using E. coli cell_free expression system

Nicolini, C., Spera, R., Festa, F., Belmonte, L., Chong, S., Pechkova, E. & LaBaer, J., 2013, In : Journal of Nanomedicine and Nanotechnology. 4, 5, 1000181.

Research output: Contribution to journalArticle

Protein Array Analysis
Cell-Free System
Escherichia coli
Mass spectrometry
Mass Spectrometry
14 Citations (Scopus)

Quantifying antibody binding on protein microarrays using microarray nonlinear calibration

Yu, X., Wallstrom, G., Magee, D., Mendoza, D. E. A., Wang, J., Bian, X., Graves, M. & LaBaer, J., May 2013, In : BioTechniques. 54, 5, p. 257-264 8 p.

Research output: Contribution to journalArticle

Protein Array Analysis
Microarrays
Calibration
Carrier Proteins
Antibodies
303 Citations (Scopus)

Reduced Incidence of Prevotella and Other Fermenters in Intestinal Microflora of Autistic Children

Kang, D. W., Park, J., Ilhan, Z. E., Wallstrom, G., LaBaer, J., Adams, J. & Krajmalnik-Brown, R., Jul 3 2013, In : PLoS One. 8, 7, e68322.

Research output: Contribution to journalArticle

Prevotella
Fermenters
fermenters
Nutrition
Autistic Disorder
23 Citations (Scopus)

Robust microarray production of freshly expressed proteins in a human milieu

Festa, F., Rollins, S. M., Vattem, K., Hathaway, M., Lorenz, P., Mendoza, E. A., Yu, X., Qiu, J., Kilmer, G., Jensen, P., Webb, B., Ryan, E. T. & LaBaer, J., Jun 2013, In : Proteomics - Clinical Applications. 7, 5-6, p. 372-377 6 p.

Research output: Contribution to journalArticle

Microarrays
Proteins
Protein Array Analysis
Reticulocytes
Transcription
42 Citations (Scopus)

Serological autoantibody profiling of type 1 diabetes by protein arrays

Miersch, S., Bian, X., Wallstrom, G., Sibani, S., Logvinenko, T., Wasserfall, C. H., Schatz, D., Atkinson, M., Qiu, J. & LaBaer, J., Dec 6 2013, In : Journal of Proteomics. 94, p. 486-496 11 p.

Research output: Contribution to journalArticle

Protein Array Analysis
Medical problems
Type 1 Diabetes Mellitus
Autoantibodies
Autoantigens
54 Citations (Scopus)

Statistical design for biospecimen cohort size in proteomics-based biomarker discovery and verification studies

Skates, S. J., Gillette, M. A., LaBaer, J., Carr, S. A., Anderson, L., Liebler, D. C., Ransohoff, D., Rifai, N., Kondratovich, M., Težak, Ž., Mansfield, E., Oberg, A. L., Wright, I., Barnes, G., Gail, M., Mesri, M., Kinsinger, C. R., Rodriguez, H. & Boja, E. S., Dec 6 2013, In : Journal of Proteome Research. 12, 12, p. 5383-5394 12 p.

Research output: Contribution to journalArticle

Biomarkers
Proteomics
National Heart, Lung, and Blood Institute (U.S.)
Education
Proteins
2012
25 Citations (Scopus)

Biomarkers in rheumatology, Now and in the future

Gibson, D. S., Rooney, M. E., Finnegan, S., Qiu, J., Thompson, D. C., LaBaer, J., Pennington, S. R. & Duncan, M. W., Mar 2012, In : Rheumatology. 51, 3, p. 423-433 11 p., ker358.

Research output: Contribution to journalArticle

Rheumatology
Biomarkers
Proteomics
Technology
Proteins
21 Citations (Scopus)

Circulating and synovial antibody profiling of juvenile arthritis patients by nucleic acid programmable protein arrays

Gibson, D. S., Qiu, J., Mendoza, E. A., Barker, K., Rooney, M. E. & LaBaer, J., Apr 17 2012, In : Arthritis Research and Therapy. 14, 2, R77.

Research output: Contribution to journalArticle

Protein Array Analysis
Juvenile Arthritis
Nucleic Acids
Antibodies
Autoantibodies
48 Citations (Scopus)

Detection of multiple autoantibodies in patients with ankylosing spondylitis using nucleic acid programmable protein arrays

Wright, C., Sibani, S., Trudgian, D., Fischer, R., Kessler, B., LaBaer, J. & Bowness, P., Feb 2012, In : Molecular and Cellular Proteomics. 11, 2

Research output: Contribution to journalArticle

Protein Array Analysis
Ankylosing Spondylitis
Autoantibodies
Nucleic Acids
Autoantigens

Detection of multiple autoantibodies in patients with ankylosing spondylitis using nucleic acid programmable protein arrays.

Wright, C., Sibani, S., Trudgian, D., Fischer, R., Kessler, B., LaBaer, J. & Bowness, P., Feb 2012, In : Molecular & cellular proteomics : MCP. 11, 2

Research output: Contribution to journalArticle

Protein Array Analysis
Ankylosing Spondylitis
Autoantibodies
Nucleic Acids
Autoantigens
21 Citations (Scopus)

High density diffusion-free nanowell arrays

Takulapalli, B. R., Qiu, J., Magee, D., Kahn, P., Brunner, A., Barker, K., Means, S., Miersch, S., Bian, X., Mendoza, A., Festa, F., Syal, K., Park, J., LaBaer, J. & Wiktor, P., Aug 3 2012, In : Journal of Proteome Research. 11, 8, p. 4382-4391 10 p.

Research output: Contribution to journalArticle

Protein Array Analysis
Proteins
Nucleic Acids
Silicon
Proteomics
24 Citations (Scopus)

Improving international research with clinical specimens: 5 achievable objectives

LaBaer, J., Dec 7 2012, In : Journal of Proteome Research. 11, 12, p. 5592-5601 10 p.

Research output: Contribution to journalArticle

Translational Medical Research
Proteomics
Research
Frustration
Metabolomics
23 Citations (Scopus)

Self-assembled protein arrays from an ornithodoros moubata salivary gland expression library

Manzano-Román, R., Díaz-Martín, V., González-González, M., Matarraz, S., Álvarez-Prado, A. F., LaBaer, J., Orfao, A., Pérez-Sánchez, R. & Fuentes, M., Dec 7 2012, In : Journal of Proteome Research. 11, 12, p. 5972-5982 11 p.

Research output: Contribution to journalArticle

Ornithodoros
Protein Array Analysis
Salivary Glands
Ticks
Proteins
2011
1 Citation (Scopus)

Editorial: Journal of proteome research - 10th anniversary

Mhancock, W., LaBaer, J. & Marko-Varga, G. A., Jan 7 2011, In : Journal of Proteome Research. 10, 1, p. 1-2 2 p.

Research output: Contribution to journalArticle

Anniversaries and Special Events
Proteome
Research
57 Citations (Scopus)

High-throughput ectopic expression screen for tamoxifen resistance identifies an atypical kinase that blocks autophagy

Gonzalez-Malerva, L., Park, J., Zou, L., Hu, Y., Moradpour, Z., Pearlberg, J., Sawyer, J., Stevens, H., Harlow, E. & LaBaer, J., Feb 1 2011, In : Proceedings of the National Academy of Sciences of the United States of America. 108, 5, p. 2058-2063 6 p.

Research output: Contribution to journalArticle

Autophagy
Tamoxifen
Phosphotransferases
MCF-7 Cells
Drug Resistance
16 Citations (Scopus)

Immunoprofiling using NAPPA protein microarrays.

Sibani, S. & LaBaer, J., 2011, In : Methods in molecular biology (Clifton, N.J.). 723, p. 149-161 13 p.

Research output: Contribution to journalArticle

Protein Array Analysis
Nucleic Acids
Antigens
Type 1 Diabetes Mellitus
Autoantibodies
19 Citations (Scopus)

Interferon-γ and proliferation responses to Salmonella enterica serotype Typhi proteins in patients with S. Typhi bacteremia in Dhaka, Bangladesh

Sheikh, A., Khanam, F., Sayeed, M. A., Rahman, T., Pacek, M., Hu, Y., Rollins, A., Bhuiyan, M. S., Rollins, S., Kalsy, A., Arifuzzaman, M., Leung, D. T., Sarracino, D. A., Krastins, B., Charles, R. C., LaRocque, R. C., Cravioto, A., Calderwood, S. B., Brooks, W. A., Harris, J. B. & 3 others, LaBaer, J., Qadri, F. & Ryan, E. T., Jun 2011, In : PLoS Neglected Tropical Diseases. 5, 6, e1193.

Research output: Contribution to journalArticle

Salmonella enterica
Bangladesh
Bacteremia
Interferons
Typhoid Fever
14 Citations (Scopus)

MALDI-TOF characterization of NAPPA-generated proteins

Spera, R., LaBaer, J. & Nicolini, C., Sep 2011, In : Journal of Mass Spectrometry. 46, 9, p. 960-965 6 p.

Research output: Contribution to journalArticle

Molecular Sequence Data
Tumor Suppressor Protein p53
Protein Array Analysis
Matrix-Assisted Laser Desorption-Ionization Mass Spectrometry
Mass spectrometry
22 Citations (Scopus)
Protein Array Analysis
Nucleic Acids
Purification
Proteins
Proteome

Nucleic acid programmable protein arrays: Versatile tools for array-based functional protein studies

Miersch, S. & LaBaer, J., Apr 2011, In : Current Protocols in Protein Science. SUPP.64, 27.2.

Research output: Contribution to journalArticle

Protein Array Analysis
Nucleic Acids
Proteins
Microarrays
Printing
23 Citations (Scopus)
Protein Array Analysis
Nucleic Acids
Proteins
Microarrays
Printing

Off-line desalting of peptide mixtures

Link, A. J. & LaBaer, J., Mar 2011, In : Cold Spring Harbor Protocols. 6, 3

Research output: Contribution to journalArticle

Salt removal
Peptides
145 Citations (Scopus)

Protein microarray signature of autoantibody biomarkers for the early detection of breast cancer

Anderson, K., Sibani, S., Wallstrom, G., Mendoza, E. A., Raphael, J., Hainsworth, E., Montor, W. R., Wong, J., Park, J., Lokko, N., Logvinenko, T., Ramachandran, N., Godwin, A. K., Marks, J., Engstrom, P. & LaBaer, J., Jan 7 2011, In : Journal of Proteome Research. 10, 1, p. 85-96 12 p.

Research output: Contribution to journalArticle

Protein Array Analysis
Biomarkers
Microarrays
Early Detection of Cancer
Autoantibodies
36 Citations (Scopus)

PSI: Biology-materials repository: A biologist's resource for protein expression plasmids

Cormier, C. Y., Park, J., Fiacco, M., Steel, J., Hunter, P., Kramer, J., Singla, R. & LaBaer, J., Jul 2011, In : Journal of Structural and Functional Genomics. 12, 2, p. 55-62 8 p.

Research output: Contribution to journalArticle

Plasmids
Proteins
Transfer Agreement
Research Personnel
Pipelines
41 Citations (Scopus)

Serum antibodies to the HPV16 proteome as biomarkers for head and neck cancer

Anderson, K., Wong, J., D'Souza, G., Riemer, A. B., Lorch, J., Haddad, R., Pai, S. I., Longtine, J., McClean, M., LaBaer, J., Kelsey, K. T. & Posner, M., Jun 7 2011, In : British Journal of Cancer. 104, 12, p. 1896-1905 10 p.

Research output: Contribution to journalArticle

Proteome
Head and Neck Neoplasms
Biomarkers
Carcinoma
Antibodies

Setup and demonstration of a nanoelectrospray ionization source and tandem mass spectrometry

Link, A. J. & LaBaer, J., Jul 2011, In : Cold Spring Harbor Protocols. 6, 7, p. 888-891 4 p.

Research output: Contribution to journalArticle

Angiotensin I
Electrospray Ionization Mass Spectrometry
Liquid chromatography
Ion sources
Tandem Mass Spectrometry
1 Citation (Scopus)

Solution protein digest

Link, A. J. & LaBaer, J., Feb 2011, In : Cold Spring Harbor Protocols. 6, 2

Research output: Contribution to journalArticle

Proteins
39 Citations (Scopus)

Trichloroacetic acid (TCA) precipitation of proteins

Link, A. J. & LaBaer, J., Aug 2011, In : Cold Spring Harbor Protocols. 6, 8, p. 993-994 2 p.

Research output: Contribution to journalArticle

Chemical Fractionation
Chemical Precipitation
Trichloroacetic Acid
Cell Extracts
Proteins
2010
69 Citations (Scopus)

p53 autoantibodies as potential detection and prognostic biomarkers in serous ovarian cancer

Anderson, K., Wong, J., Vitonis, A., Crum, C. P., Sluss, P. M., LaBaer, J. & Cramer, D., Mar 2010, In : Cancer Epidemiology Biomarkers and Prevention. 19, 3, p. 859-868 10 p.

Research output: Contribution to journalArticle

Autoantibodies
Ovarian Neoplasms
Biomarkers
Area Under Curve
Serum

Preface

LaBaer, J. & Nicolini, C., Jun 1 2010, In : Unknown Journal.

Research output: Contribution to journalArticle

35 Citations (Scopus)

Systematic analysis of the IgG antibody immune response against varicella zoster virus (VZV) using a self-assembled protein microarray

Ceroni, A., Sibani, S., Baiker, A., Pothineni, V. R., Bailer, S. M., LaBaer, J., Haas, J. & Campbell, C. J., Sep 2010, In : Molecular BioSystems. 6, 9, p. 1604-1610 7 p.

Research output: Contribution to journalArticle

Protein Array Analysis
Human Herpesvirus 3
Open Reading Frames
Antibody Formation
Immunoglobulin G
27 Citations (Scopus)

Use of a single-chain antibody library for ovarian cancer biomarker discovery

Ramirez, A. B., Loch, C. M., Zhang, Y., Liu, Y., Wang, X., Wayner, E. A., Sargent, J. E., Sibani, S., Hainsworth, E., Mendoza, E. A., Eugene, R., LaBaer, J., Urban, N. D., McIntosh, M. W. & Lampe, P. D., 2010, In : Molecular and Cellular Proteomics. 9, 7, p. 1449-1460 12 p.

Research output: Contribution to journalArticle

Single-Chain Antibodies
Tumor Biomarkers
Ovarian Neoplasms
Microarrays
Antibodies
2009
47 Citations (Scopus)

Analysis of vaccinia virus-host protein-protein interactions: Validations of yeast two-hybrid screenings

Zhang, L., Villa, N., Rahman, M., Smallwood, S., Shattuck, D., Neff, C., Dufford, M., Lanchbury, J. S., LaBaer, J. & McFadden, D., 2009, In : Journal of Proteome Research. 8, 9, p. 4311-4318 8 p.

Research output: Contribution to journalArticle

Vaccinia virus
Vaccinia
Viruses
Yeast
Screening
15 Citations (Scopus)

Automated Yeast Mating Protocol Using Open Reading Frames from Saccharomyces cerevisiae Genome to Improve Yeast Strains for Cellulosic Ethanol Production

Hughes, S. R., Hector, R. E., Rich, J. O., Qureshi, N., Bischoff, K. M., Dien, B. S., Saha, B. C., Liu, S., Cox, E. J., Jackson, J. S., Sterner, D. E., Butt, T. R., LaBaer, J. & Cotta, M. A., Aug 2009, In : JALA - Journal of the Association for Laboratory Automation. 14, 4, p. 190-199 10 p.

Research output: Contribution to journalArticle

Cellulosic ethanol
Xylose
Yeast
Open Reading Frames
Saccharomyces cerevisiae
7 Citations (Scopus)

Automated Yeast Transformation Protocol to Engineer Saccharomyces cerevisiae Strains for Cellulosic Ethanol Production with Open Reading Frames That Express Proteins Binding to Xylose Isomerase Identified Using a Robotic Two-Hybrid Screen

Hughes, S. R., Rich, J. O., Bischoff, K. M., Hector, R. E., Qureshi, N., Saha, B. C., Dien, B. S., Liu, S., Jackson, J. S., Sterner, D. E., Butt, T. R., LaBaer, J. & Cotta, M. A., Aug 2009, In : JALA - Journal of the Association for Laboratory Automation. 14, 4, p. 200-212 13 p.

Research output: Contribution to journalArticle

xylose isomerase
Cellulosic ethanol
Xylose
Robotics
Protein Binding
22 Citations (Scopus)

Engineered Saccharomyces cerevisiae strain for improved xylose utilization with a three-plasmid SUMO yeast expression system

Hughes, S. R., Sterner, D. E., Bischoff, K. M., Hector, R. E., Dowd, P. F., Qureshi, N., Bang, S. S., Grynaviski, N., Chakrabarty, T., Johnson, E. T., Dien, B. S., Mertens, J. A., Caughey, R. J., Liu, S., Butt, T. R., LaBaer, J., Cotta, M. A. & Rich, J. O., Jan 2009, In : Plasmid. 61, 1, p. 22-38 17 p.

Research output: Contribution to journalArticle

xylose isomerase
Xylose
Ubiquitin
Saccharomyces cerevisiae
Plasmids
58 Citations (Scopus)

Genome-wide study of Pseudomonas aeruginosa outer membrane protein immunogenicity using self-assembling protein microarrays

Montor, W. R., Huang, J., Hu, Y., Hainsworth, E., Lynch, S., Kronish, J. W., Ordonez, C. L., Logvinenko, T., Lory, S. & LaBaer, J., Nov 2009, In : Infection and Immunity. 77, 11, p. 4877-4886 10 p.

Research output: Contribution to journalArticle

Protein Array Analysis
Pseudomonas aeruginosa
Membrane Proteins
Genome
Cystic Fibrosis
282 Citations (Scopus)

High-resolution DNA-binding specificity analysis of yeast transcription factors

Zhu, C., Byers, K. J. R. P., McCord, R. P., Shi, Z., Berger, M. F., Newburger, D. E., Saulrieta, K., Smith, Z., Shah, M. V., Radhakrishnan, M., Philippakis, A. A., Hu, Y., De Masi, F., Pacek, M., Rolfs, A., Murthy, T., LaBaer, J. & Bulyk, M. L., Apr 2009, In : Genome Research. 19, 4, p. 556-566 11 p.

Research output: Contribution to journalArticle

Transcription Factors
Yeasts
DNA
Fungal Proteins
Binding Sites
8 Citations (Scopus)

In-gel trypsin digest of gel-fractionated proteins

Link, A. J. & LaBaer, J., 2009, In : Cold Spring Harbor Protocols. 4, 2

Research output: Contribution to journalArticle

Trypsin
Gels
Proteins
2 Citations (Scopus)

Locations everyone: Lights, Camera, Action!

Murphy, R. F. & LaBaer, J., Jan 2009, In : Journal of Proteome Research. 8, 1, p. 1 1 p.

Research output: Contribution to journalArticle

Proteome
Mass spectrometry
Microscopic examination
Animals
Cameras
35 Citations (Scopus)

Protein Structure Initiative Material Repository: An open shared public resource of structural genomics plasmids for the biological community

Cormier, C. Y., Mohr, S. E., Zuo, D., Hu, Y., Rolfs, A., Kramer, J., Taycher, E., Kelley, F., Fiacco, M., Turnbull, G. & LaBaer, J., Nov 10 2009, In : Nucleic Acids Research. 38, SUPPL.1, gkp999.

Research output: Contribution to journalArticle

Biota
Genomics
Plasmids
Proteins
Transfer Agreement