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Research Output 1995 2019

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Article
2019
7 Citations (Scopus)

Autonomously designed free-form 2D DNA origami

Jun, H., Zhang, F., Shepherd, T., Ratanalert, S., Qi, X., Yan, H. & Bathe, M., Jan 1 2019, In : Science Advances. 5, 1, eaav0655.

Research output: Contribution to journalArticle

Open Access
DNA
Nanotechnology

Efficient Long-Range, Directional Energy Transfer through DNA-Templated Dye Aggregates

Zhou, X., Mandal, S., Jiang, S., Lin, S., Yang, J., Liu, Y., Whitten, D. G., Woodbury, N. & Yan, H., Jan 1 2019, In : Journal of the American Chemical Society.

Research output: Contribution to journalArticle

Energy Transfer
Energy transfer
Coloring Agents
Dyes
Fluorescence

ENTRNA: A framework to predict RNA foldability

Su, C., Weir, J. D., Zhang, F., Yan, H. & Wu, T., Jul 3 2019, In : BMC bioinformatics. 20, 1, 373.

Research output: Contribution to journalArticle

Open Access
RNA
Predict
Folding
Structure Prediction
Data-driven
6 Citations (Scopus)

Paranemic Crossover DNA: There and Back Again

Wang, X., Chandrasekaran, A. R., Shen, Z., Ohayon, Y. P., Wang, T., Kizer, M. E., Sha, R., Mao, C., Yan, H., Zhang, X., Liao, S., Ding, B., Chakraborty, B., Jonoska, N., Niu, D., Gu, H., Chao, J., Gao, X., Li, Y., Ciengshin, T. & 1 others, Seeman, N. C., May 22 2019, In : Chemical reviews. 119, 10, p. 6273-6289 17 p.

Research output: Contribution to journalArticle

DNA
Molecular biology
Nanotechnology
Molecular structure
Transducers
1 Citation (Scopus)

Redox Engineering of Cytochrome c using DNA Nanostructure-Based Charged Encapsulation and Spatial Control

Ge, Z., Su, Z., Simmons, C. R., Li, J., Jiang, S., Li, W., Yang, Y., Liu, Y., Chiu, W., Fan, C. & Yan, H., Apr 17 2019, In : ACS Applied Materials and Interfaces. 11, 15, p. 13874-13880 7 p.

Research output: Contribution to journalArticle

Cytochromes c
Encapsulation
Nanostructures
DNA
Proteins

Solidifying framework nucleic acids with silica

Jing, X., Zhang, F., Pan, M., Dai, X., Li, J., Wang, L., Liu, X., Yan, H. & Fan, C., Jan 1 2019, In : Nature protocols.

Research output: Contribution to journalArticle

Silicon Dioxide
Nucleic Acids
DNA
Nanotechnology
Nanostructures
2 Citations (Scopus)

Tunable Nanoscale Cages from Self-Assembling DNA and Protein Building Blocks

Xu, Y., Jiang, S., Simmons, C. R., Narayanan, R. P., Zhang, F., Aziz, A. M., Yan, H. & Stephanopoulos, N., Mar 26 2019, In : ACS Nano. 13, 3, p. 3545-3554 10 p.

Research output: Contribution to journalArticle

assembling
DNA
deoxyribonucleic acid
proteins
Proteins

Watching a Single Fluorophore Molecule Walk into a Plasmonic Hotspot

Xin, L., Lu, M., Both, S., Pfeiffer, M., Urban, M. J., Zhou, C., Yan, H., Weiss, T., Liu, N. & Lindfors, K., Apr 17 2019, In : ACS Photonics. 6, 4, p. 985-993 9 p.

Research output: Contribution to journalArticle

Open Access
Fluorophores
emitters
Nanosystems
Light
fluorescence
2018
3 Citations (Scopus)

2D Enzyme Cascade Network with Efficient Substrate Channeling by Swinging Arms

Yang, Y. R., Fu, J., Wootten, S., Qi, X., Liu, M., Yan, H. & Liu, Y., Feb 2 2018, In : ChemBioChem. 19, 3, p. 212-216 5 p.

Research output: Contribution to journalArticle

Substrates
Enzymes
NAD
Atomic Force Microscopy
DNA
134 Citations (Scopus)

A DNA nanorobot functions as a cancer therapeutic in response to a molecular trigger in vivo

Li, S., Jiang, Q., Liu, S., Zhang, Y., Tian, Y., Song, C., Wang, J., Zou, Y., Anderson, G. J., Han, J. Y., Chang, Y., Liu, Y., Zhang, C., Chen, L., Zhou, G., Nie, G., Yan, H., Ding, B. & Zhao, Y., Mar 1 2018, In : Nature Biotechnology. 36, 3, p. 258-264 7 p.

Research output: Contribution to journalArticle

Nanorobots
Tumors
DNA
Neoplasms
Thrombin
12 Citations (Scopus)

A Synthetic Light-Driven Substrate Channeling System for Precise Regulation of Enzyme Cascade Activity Based on DNA Origami

Chen, Y., Ke, G., Ma, Y., Zhu, Z., Liu, M., Liu, Y., Yan, H. & Yang, C. J., Jul 18 2018, In : Journal of the American Chemical Society. 140, 28, p. 8990-8996 7 p.

Research output: Contribution to journalArticle

DNA
Enzymes
Light
Synthetic Biology
Substrates
1 Citation (Scopus)

Constructing Submonolayer DNA Origami Scaffold on Gold Electrode for Wiring of Redox Enzymatic Cascade Pathways

Ge, Z., Fu, J., Liu, M., Jiang, S., Andreoni, A., Zuo, X., Liu, Y., Yan, H. & Fan, C., Jan 1 2018, (Accepted/In press) In : ACS Applied Materials and Interfaces.

Research output: Contribution to journalArticle

Electric wiring
Scaffolds
Microelectronics
Gold
DNA
17 Citations (Scopus)

DNA-Guided Plasmonic Helix with Switchable Chirality

Lan, X., Liu, T., Wang, Z., Govorov, A. O., Yan, H. & Liu, Y., Sep 19 2018, In : Journal of the American Chemical Society. 140, 37, p. 11763-11770 8 p.

Research output: Contribution to journalArticle

Chirality
Nanotubes
DNA
Nanorods
Gold
13 Citations (Scopus)

DNA origami nanostructures can exhibit preferential renal uptake and alleviate acute kidney injury

Jiang, D., Ge, Z., Im, H. J., England, C. G., Ni, D., Hou, J., Zhang, L., Kutyreff, C. J., Yan, Y., Liu, Y., Cho, S. Y., Engle, J. W., Shi, J., Huang, P., Fan, C., Yan, H. & Cai, W., Nov 1 2018, In : Nature Biomedical Engineering. 2, 11, p. 865-877 13 p.

Research output: Contribution to journalArticle

Nanostructures
Acute Kidney Injury
DNA
Kidney
Positron emission tomography
17 Citations (Scopus)

Exploring the speed limit of toehold exchange with a cartwheeling DNA acrobat

Li, J., Johnson-Buck, A., Yang, Y. R., Shih, W. M., Yan, H. & Walter, N. G., May 7 2018, (Accepted/In press) In : Nature Nanotechnology. p. 1-7 7 p.

Research output: Contribution to journalArticle

DNA
deoxyribonucleic acid
Kinetics
locomotion
oligonucleotides
3 Citations (Scopus)

Layered-Crossover Tiles with Precisely Tunable Angles for 2D and 3D DNA Crystal Engineering

Hong, F., Jiang, S., Lan, X., Narayanan, R. P., Sulc, P., Zhang, F., Liu, Y. & Yan, H., Nov 7 2018, In : Journal of the American Chemical Society. 140, 44, p. 14670-14676 7 p.

Research output: Contribution to journalArticle

Crystal engineering
Tile
DNA
Nanotechnology
Nanoparticles
31 Citations (Scopus)

Programmed coherent coupling in a synthetic DNA-based excitonic circuit

Boulais, E., Sawaya, N. P. D., Veneziano, R., Andreoni, A., Banal, J. L., Kondo, T., Mandal, S., Lin, S., Schlau-Cohen, G. S., Woodbury, N., Yan, H., Aspuru-Guzik, A. & Bathe, M., Feb 1 2018, In : Nature Materials. 17, 2, p. 159-166 8 p.

Research output: Contribution to journalArticle

DNA
deoxyribonucleic acid
Coloring Agents
Dyes
dyes
2 Citations (Scopus)

Programming molecular topologies from single-stranded nucleic acids

Qi, X., Zhang, F., Su, Z., Jiang, S., Han, D., Ding, B., Liu, Y., Chiu, W., Yin, P. & Yan, H., Dec 1 2018, In : Nature Communications. 9, 1, 4579.

Research output: Contribution to journalArticle

Nanostructures
nucleic acids
programming
Nucleic Acids
topology
3 Citations (Scopus)

Self-Assembly of a 3D DNA Crystal Structure with Rationally Designed Six-Fold Symmetry

Zhang, F., Simmons, C. R., Gates, J., Liu, Y. & Yan, H., Sep 17 2018, In : Angewandte Chemie - International Edition. 57, 38, p. 12504-12507 4 p.

Research output: Contribution to journalArticle

Crystal symmetry
Crystal lattices
Self assembly
DNA
Crystal structure
2017
6 Citations (Scopus)

A highly stable and scalable photosynthetic reaction center-graphene hybrid electrode system for biomimetic solar energy transduction

Zhang, H., Carey, A. M., Jeon, K. W., Liu, M., Murrell, T. D., Locsin, J., Lin, S., Yan, H., Woodbury, N. & Seo, D., 2017, In : Journal of Materials Chemistry A. 5, 13, p. 6038-6041 4 p.

Research output: Contribution to journalArticle

Photosynthetic Reaction Center Complex Proteins
Graphite
Biomimetics
Solar energy
Graphene
27 Citations (Scopus)

Cuboid Vesicles Formed by Frame-Guided Assembly on DNA Origami Scaffolds

Dong, Y., Yang, Y. R., Zhang, Y., Wang, D., Wei, X., Banerjee, S., Liu, Y., Yang, Z., Yan, H. & Liu, D., Feb 1 2017, In : Angewandte Chemie - International Edition. 56, 6, p. 1586-1589 4 p.

Research output: Contribution to journalArticle

Scaffolds
DNA
Amphiphiles
Surface-Active Agents
Nanostructures
184 Citations (Scopus)

DNA Origami: Scaffolds for Creating Higher Order Structures

Hong, F., Zhang, F., Liu, Y. & Yan, H., Oct 25 2017, In : Chemical Reviews. 117, 20, p. 12584-12640 57 p.

Research output: Contribution to journalArticle

Scaffolds
DNA
Single-Stranded DNA
Materials science
Oligonucleotides
2 Citations (Scopus)

Enhancing Photocurrent Generation in Photosynthetic Reaction Center-Based Photoelectrochemical Cells with Biomimetic DNA Antenna

Carey, A. M., Zhang, H., Liu, M., Sharaf, D., Akram, N., Yan, H., Lin, S., Woodbury, N. & Seo, D., 2017, (Accepted/In press) In : ChemSusChem.

Research output: Contribution to journalArticle

Photosynthetic Reaction Center Complex Proteins
Photoelectrochemical cells
Biomimetics
Photocurrents
Energy transfer
4 Citations (Scopus)

Orange Carotenoid Protein as a Control Element in an Antenna System Based on a DNA Nanostructure

Andreoni, A., Lin, S., Liu, H., Blankenship, R. E., Yan, H. & Woodbury, N., Feb 8 2017, In : Nano Letters. 17, 2, p. 1174-1180 7 p.

Research output: Contribution to journalArticle

carotenoids
Carotenoids
Nanostructures
DNA
antennas
8 Citations (Scopus)

Practical aspects of structural and dynamic DNA nanotechnology

Wang, P., Chatterjee, G., Yan, H., Labean, T. H., Turberfield, A. J., Castro, C. E., Seelig, G. & Ke, Y., Dec 1 2017, In : MRS Bulletin. 42, 12, p. 889-896 8 p.

Research output: Contribution to journalArticle

nanotechnology
Nanotechnology
DNA
deoxyribonucleic acid
Nanostructures
19 Citations (Scopus)

Programmable Supra-Assembly of a DNA Surface Adapter for Tunable Chiral Directional Self-Assembly of Gold Nanorods

Lan, X., Su, Z., Zhou, Y., Meyer, T., Ke, Y., Wang, Q., Chiu, W., Liu, N., Zou, S., Yan, H. & Liu, Y., Nov 13 2017, In : Angewandte Chemie - International Edition. 56, 46, p. 14632-14636 5 p.

Research output: Contribution to journalArticle

Nanorods
Gold
Self assembly
DNA
Stairs
35 Citations (Scopus)

Single-stranded DNA and RNA origami

Han, D., Qi, X., Myhrvold, C., Wang, B., Dai, M., Jiang, S., Bates, M., Liu, Y., An, B., Zhang, F., Yan, H. & Yin, P., Dec 15 2017, In : Science. 358, 6369, aao2648.

Research output: Contribution to journalArticle

Nanostructures
Single-Stranded DNA
Nucleotides
RNA
Nanotechnology
1 Citation (Scopus)

Tracking Single DNA Nanodevices in Hierarchically Meso-Macroporous Antimony-Doped Tin Oxide Demonstrates Finite Confinement

Mieritz, D., Li, X., Volosin, A., Liu, M., Yan, H., Walter, N. G. & Seo, D., Jun 27 2017, In : Langmuir. 33, 25, p. 6410-6418 9 p.

Research output: Contribution to journalArticle

Antimony
antimony
Tin oxides
tin oxides
DNA
6 Citations (Scopus)

Tuning the Cavity Size and Chirality of Self-Assembling 3D DNA Crystals

Simmons, C. R., Zhang, F., MacCulloch, T., Fahmi, N., Stephanopoulos, N., Liu, Y., Seeman, N. C. & Yan, H., Aug 16 2017, In : Journal of the American Chemical Society. 139, 32, p. 11254-11260 7 p.

Research output: Contribution to journalArticle

Chirality
DNA
Tuning
Crystals
Oligonucleotides
4 Citations (Scopus)

Understanding the Elementary Steps in DNA Tile-Based Self-Assembly

Jiang, S., Hong, F., Hu, H., Yan, H. & Liu, Y., Sep 26 2017, In : ACS Nano. 11, 9, p. 9370-9381 12 p.

Research output: Contribution to journalArticle

tiles
Tile
Self assembly
self assembly
DNA
2016
12 Citations (Scopus)

3D Framework DNA Origami with Layered Crossovers

Hong, F., Jiang, S., Wang, T., Liu, Y. & Yan, H., 2016, In : Angewandte Chemie - International Edition. 55, 41, p. 12832-12835 4 p.

Research output: Contribution to journalArticle

DNA
Nanostructures
Engineers
Scaffolds
Metals
32 Citations (Scopus)

Assembly of multienzyme complexes on DNA nanostructures

Fu, J., Yang, Y. R., Dhakal, S., Zhao, Z., Liu, M., Zhang, T., Walter, N. G. & Yan, H., Nov 1 2016, In : Nature Protocols. 11, 11, p. 2243-2273 31 p.

Research output: Contribution to journalArticle

Multienzyme Complexes
Nanostructures
DNA
Molecules
Coenzymes
17 Citations (Scopus)

A Three-Enzyme Pathway with an Optimised Geometric Arrangement to Facilitate Substrate Transfer

Liu, M., Fu, J., Qi, X., Wootten, S., Woodbury, N., Liu, Y. & Yan, H., Jun 16 2016, In : ChemBioChem. p. 1097-1101 5 p.

Research output: Contribution to journalArticle

Substrates
Enzymes
Molecules
DNA
17 Citations (Scopus)

Construction and Structure Determination of a Three-Dimensional DNA Crystal

Simmons, C. R., Zhang, F., Birktoft, J. J., Qi, X., Han, D., Liu, Y., Sha, R., Abdallah, H. O., Hernandez, C., Ohayon, Y. P., Seeman, N. C. & Yan, H., Aug 10 2016, In : Journal of the American Chemical Society. 138, 31, p. 10047-10054 8 p.

Research output: Contribution to journalArticle

DNA
Crystals
Nanotechnology
Nucleotides
Crystal lattices
166 Citations (Scopus)

Designer nanoscale DNA assemblies programmed from the top down

Veneziano, R., Ratanalert, S., Zhang, K., Zhang, F., Yan, H., Chiu, W. & Bathe, M., Jun 24 2016, In : Science. 352, 6293, 1534.

Research output: Contribution to journalArticle

DNA
Cryoelectron Microscopy
Base Pairing
Buffers
Salts
39 Citations (Scopus)

Directional Regulation of Enzyme Pathways through the Control of Substrate Channeling on a DNA Origami Scaffold

Ke, G., Liu, M., Jiang, S., Qi, X., Yang, Y. R., Wootten, S., Zhang, F., Zhu, Z., Liu, Y., Yang, C. J. & Yan, H., 2016, (Accepted/In press) In : Angewandte Chemie - International Edition.

Research output: Contribution to journalArticle

Scaffolds (biology)
Scaffolds
DNA
Enzymes
Substrates
26 Citations (Scopus)

DNA based arithmetic function: A half adder based on DNA strand displacement

Li, W., Zhang, F., Yan, H. & Liu, Y., Feb 14 2016, In : Nanoscale. 8, 6, p. 3775-3784 10 p.

Research output: Contribution to journalArticle

Logic gates
Adders
DNA
Logic circuits
Nucleic acids
34 Citations (Scopus)

DNAzyme-Based Logic Gate-Mediated DNA Self-Assembly

Zhang, C., Yang, J., Jiang, S., Liu, Y. & Yan, H., Jan 13 2016, In : Nano Letters. 16, 1, p. 736-741 6 p.

Research output: Contribution to journalArticle

Catalytic DNA
Logic gates
Self assembly
logic
self assembly
135 Citations (Scopus)

Nanocaged enzymes with enhanced catalytic activity and increased stability against protease digestion

Zhao, Z., Fu, J., Dhakal, S., Johnson-Buck, A., Liu, M., Zhang, T., Woodbury, N., Liu, Y., Walter, N. G. & Yan, H., Feb 10 2016, In : Nature Communications. 7, 10619.

Research output: Contribution to journalArticle

protease
catalytic activity
enzymes
Digestion
Catalyst activity
8 Citations (Scopus)

Photocurrent Generation by Photosynthetic Purple Bacterial Reaction Centers Interfaced with a Porous Antimony-Doped Tin Oxide (ATO) Electrode

Carey, A. M., Zhang, H., Mieritz, D., Volosin, A., Gardiner, A. T., Cogdell, R. J., Yan, H., Seo, D., Lin, S. & Woodbury, N., Sep 28 2016, In : ACS Applied Materials and Interfaces. 8, 38, p. 25104-25110 7 p.

Research output: Contribution to journalArticle

Antimony
Tin oxides
Photocurrents
Electrodes
Electrons
10 Citations (Scopus)

Rational design of DNA-actuated enzyme nanoreactors guided by single molecule analysis

Dhakal, S., Adendorff, M. R., Liu, M., Yan, H., Bathe, M. & Walter, N. G., Feb 7 2016, In : Nanoscale. 8, 5, p. 3125-3137 13 p.

Research output: Contribution to journalArticle

Nanoreactors
DNA
Enzymes
Molecules
Assays
13 Citations (Scopus)

Self-Assembly of Complex DNA Tessellations by Using Low-Symmetry Multi-arm DNA Tiles

Zhang, F., Jiang, S., Li, W., Hunt, A., Liu, Y. & Yan, H., 2016, (Accepted/In press) In : Angewandte Chemie - International Edition.

Research output: Contribution to journalArticle

Tile
Self assembly
DNA
Engineers
2015
145 Citations (Scopus)

Complex wireframe DNA origami nanostructures with multi-arm junction vertices

Zhang, F., Jiang, S., Wu, S., Li, Y., Mao, C., Liu, Y. & Yan, H., Sep 3 2015, In : Nature Nanotechnology. 10, 9, p. 779-784 6 p.

Research output: Contribution to journalArticle

Nanostructures
apexes
DNA
deoxyribonucleic acid
tiles
60 Citations (Scopus)

DNA Nanostructures as Programmable Biomolecular Scaffolds

Yang, Y. R., Liu, Y. & Yan, H., Aug 19 2015, In : Bioconjugate Chemistry. 26, 8, p. 1381-1395 15 p.

Research output: Contribution to journalArticle

Nanostructures
Scaffolds
DNA
Proteins
Engineers
6 Citations (Scopus)

Use of a conformational switching aptamer for rapid and specific ex vivo identification of central nervous system lymphoma in a xenograft model

Georges, J. F., Liu, X., Eschbacher, J., Nichols, J., Mooney, M. A., Joy, A., Spetzler, R. F., Feuerstein, B. G., Preul, M. C., Anderson, T., Yan, H. & Nakaji, P., Apr 15 2015, In : PLoS One. 10, 4, e0123607.

Research output: Contribution to journalArticle

Neurology
B-Cell Lymphoma
lymphoma
Heterografts
central nervous system
2014
47 Citations (Scopus)

A DNA-directed light-harvesting/reaction center system

Dutta, P. K., Levenberg, S., Loskutov, A., Jun, D., Saer, R., Beatty, J. T., Lin, S., Liu, Y., Woodbury, N. & Yan, H., Nov 26 2014, In : Journal of the American Chemical Society. 136, 47, p. 16618-16625 8 p.

Research output: Contribution to journalArticle

DNA
Light
Coloring Agents
Dyes
Optics and Photonics
13 Citations (Scopus)

Controlled nucleation and growth of DNA tile arrays within prescribed DNA origami frames and their dynamics

Li, W., Yang, Y., Jiang, S., Yan, H. & Liu, Y., Mar 12 2014, In : Journal of the American Chemical Society. 136, 10, p. 3724-3727 4 p.

Research output: Contribution to journalArticle

Tile
Oligonucleotide Array Sequence Analysis
DNA
Nucleation
Growth
34 Citations (Scopus)

DNA-cholesterol barges as programmable membrane-exploring agents

Johnson-Buck, A., Jiang, S., Yan, H. & Walter, N. G., Jun 24 2014, In : ACS Nano. 8, 6, p. 5641-5649 9 p.

Research output: Contribution to journalArticle

Barges
Cholesterol
cholesterol
DNA
deoxyribonucleic acid
88 Citations (Scopus)

Fluorescence quenching of quantum dots by gold nanoparticles: A potential long range spectroscopic ruler

Samanta, A., Zhou, Y., Zou, S., Yan, H. & Liu, Y., Sep 10 2014, In : Nano Letters. 14, 9, p. 5052-5057 6 p.

Research output: Contribution to journalArticle

Gold
Semiconductor quantum dots
Quenching
Fluorescence
quenching
10 Citations (Scopus)

Guest editorial: Nucleic acid nanotechnology

Seeman, N. C., Mao, C. & Yan, H., Jun 17 2014, In : Accounts of Chemical Research. 47, 6, p. 1643-1644 2 p.

Research output: Contribution to journalArticle

Nanotechnology
Nucleic Acids
DNA