Research Output 1955 2019

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2019

Egg desiccation leads to dehydration and enhanced innate immunity in python embryos

Brusch, G. A. & DeNardo, D. F., Jan 1 2019, In : Developmental and Comparative Immunology. 90, p. 147-151 5 p.

Research output: Contribution to journalArticle

Boidae
Desiccation
Dehydration
Innate Immunity
Ovum
2018

A chorus of color: Hierarchical and graded information content of rapid color change signals in chameleons

Ligon, R. A. & McGraw, K. J., Sep 10 2018, In : Behavioral Ecology. 29, 5, p. 1075-1087 13 p.

Research output: Contribution to journalArticle

Chamaeleonidae
color
fighting
vocalization
animal

Advances in cell-free protein array methods

Yu, X., Petritis, B., Duan, H., Xu, D. & LaBaer, J., Jan 2 2018, In : Expert Review of Proteomics. 15, 1, p. 1-11 11 p.

Research output: Contribution to journalArticle

Protein Array Analysis
Microarrays
Proteins
Biomarkers
Host-Pathogen Interactions
1 Citations

A genetic reconstruction of the invasion of the calanoid copepod Pseudodiaptomus inopinus across the North American Pacific Coast

Dexter, E., Bollens, S. M., Cordell, J., Soh, H. Y., Rollwagen-Bollens, G., Pfeifer, S. P., Goudet, J. & Vuilleumier, S., Jun 1 2018, In : Biological Invasions. 20, 6, p. 1577-1595 19 p.

Research output: Contribution to journalArticle

zooplankton
Copepoda
coasts
coast
ballast water
1 Citations

An ant genus-group (Prenolepis) illuminates the biogeography and drivers of insect diversification in the Indo-Pacific

Matos-Maraví, P., Clouse, R. M., Sarnat, E. M., Economo, E. P., LaPolla, J. S., Borovanska, M., Rabeling, C., Czekanski-Moir, J., Latumahina, F., Wilson, E. O. & Janda, M., Jun 1 2018, In : Molecular Phylogenetics and Evolution. 123, p. 16-25 10 p.

Research output: Contribution to journalArticle

New Guinea
Pacific Islands
Ants
Pacific Ocean Islands
biogeography

An Escherichia coli nitrogen starvation response is important for mutualistic coexistence with Rhodopseudomonas palustris

McCully, A. L., Behringer, M. G., Gliessman, J. R., Pilipenko, E. V., Mazny, J. L., Lynch, M., Drummond, D. A. & McKinlay, J. B., Jul 1 2018, In : Applied and Environmental Microbiology. 84, 14, e00404-18

Research output: Contribution to journalArticle

Rhodopseudomonas palustris
Rhodopseudomonas
coculture
Coculture Techniques
Starvation

Antennal Olfactory Physiology and Behavior of Males of the Ponerine Ant Harpegnathos saltator

Ghaninia, M., Berger, S. L., Reinberg, D., Zwiebel, L. J., Ray, A. & Liebig, J., Jan 1 2018, (Accepted/In press) In : Journal of Chemical Ecology.

Research output: Contribution to journalArticle

Sensilla
Ants
sensilla
Hydrocarbons
ant

Antimicrobial Efficacy and Life Cycle Impact of Silver-Containing Food Containers

Bi, Y., Westerband, E. I., Alum, A., Brown, F. C., Abbaszadegan, M., Hristovski, K. D., Hicks, A. L. & Westerhoff, P. K., Jan 1 2018, (Accepted/In press) In : ACS Sustainable Chemistry and Engineering.

Research output: Contribution to journalArticle

Containers
Life cycle
silver
Silver
life cycle
1 Citations

An unbiased genome-wide view of the mutation rate and spectrum of the endosymbiotic bacterium teredinibacter turnerae

Senra, M. V. X., Sung, W., Ackerman, M., Miller, S. F., Lynch, M. & Soares, C. A. G., Jan 1 2018, In : Genome biology and evolution. 10, 3, p. 723-730 8 p.

Research output: Contribution to journalArticle

Teredinibacter turnerae
Mutation Rate
mutation
genome
Base Pairing
Tenebrionidae
dunes
dune
Colorado River
valleys
1 Citations

A Perspective on Proteomics of Infectious Diseases

Venkatesh, A., Gil, C., Fuentes, M., Labaer, J. & Srivastava, S., Jan 1 2018, (Accepted/In press) In : Proteomics - Clinical Applications.

Research output: Contribution to journalArticle

Proteomics
Communicable Diseases
Proteins
Health
Proteome
1 Citations

A plant-produced vaccine protects mice against lethal West Nile virus infection without enhancing Zika or dengue virus infectivity

Lai, H., Paul, A. M., Sun, H., He, J., Yang, M., Bai, F. & Chen, Q., Jan 1 2018, (Accepted/In press) In : Vaccine.

Research output: Contribution to journalArticle

Zika virus
West Nile virus
Dengue virus
Dengue Virus
Virus Diseases

Assessing fossil fuel CO2 emissions in California using atmospheric observations and models

Graven, H. , Fischer, M. L. , Lueker, T. , Jeong, S. , Guilderson, T. P. , Keeling, R. F. , Bambha, R. , Brophy, K. , Callahan, W. , Cui, X. , Frankenberg, C. , Gurney, K. R. , Lafranchi, B. W. , Lehman, S. J. , Michelsen, H. , Miller, J. B. , Newman, S. , Paplawsky, W. , Parazoo, N. C. , Sloop, C. & 1 others Walker, S. J., Jun 1 2018, In : Environmental Research Letters. 13, 6, 065007

Research output: Contribution to journalArticle

Fossil Fuels
Fossil fuels
fossil fuel
systems analysis
atmospheric transport
1 Citations
Birds
physiological response
behavioral response
predator
bird

Behaviors of shooter and goalkeeper interact to determine the outcome of soccer penalties

Hunter, A. H., Angilletta, M. J. & Wilson, R. S., Jan 1 2018, (Accepted/In press) In : Scandinavian Journal of Medicine and Science in Sports.

Research output: Contribution to journalArticle

Soccer
Sports
Motivation
Pressure
Direction compound
1 Citations

Beyond Cost-Benefit Analysis in the Governance of Synthetic Biology

Wallach, W., Saner, M. & Marchant, G., Jan 1 2018, In : Hastings Center Report. 48, p. S70-S77

Research output: Contribution to journalArticle

Synthetic Biology
cost-benefit analysis
Cost-Benefit Analysis
biology
Biofuels
1 Citations

Cancer initiation and progression within the cancer microenvironment

Leong, S. P., Aktipis, A. & Maley, C., Jul 11 2018, (Accepted/In press) In : Clinical and Experimental Metastasis. p. 1-7 7 p.

Research output: Contribution to journalArticle

Tumor Microenvironment
Neoplasms
Growth
Biological Phenomena
Melanoma

Characterization of the neuroinvasive profile of a pseudorabies virus recombinant expressing the mTurquoise2 reporter in single and multiple injection experiments

Hogue, I. B., Card, J. P., Rinaman, L., Staniszewska Goraczniak, H. & Enquist, L. W., Oct 1 2018, In : Journal of Neuroscience Methods. 308, p. 228-239 12 p.

Research output: Contribution to journalArticle

Suid Herpesvirus 1
Injections
Neurons
Technology
Infection
3 Citations

China's new rural “separating three property rights” land reform results in grassland degradation: Evidence from Inner Mongolia

Li, A., Wu, J., Zhang, X., Xue, J., Liu, Z., Han, X. & Huang, J., Feb 1 2018, In : Land Use Policy. 71, p. 170-182 13 p.

Research output: Contribution to journalArticle

land reform
property rights
Mongolia
agrarian reform
right of ownership

China’s progress towards sustainable land development and ecological civilization

Sun, X., Gao, L., Ren, H., Ye, Y., Li, A., Stafford-Smith, M., Connor, J. D., Wu, J. & Bryan, B. A., Jan 1 2018, (Accepted/In press) In : Landscape Ecology.

Research output: Contribution to journalArticle

civilization
China
land development

CO2 transport, variability, and budget over the Southern California Air Basin using the high-resolution WRF-VPRM model during the CalNex 2010 campaign

Park, C., Gerbig, C., Newman, S., Ahmadov, R., Feng, S., Gurney, K. R., Carmichael, G. R., Park, S. Y., Lee, H. W., Goulden, M., Stutz, J., Peischl, J. & Ryerson, T., Jun 1 2018, In : Journal of Applied Meteorology and Climatology. 57, 6, p. 1337-1352 16 p.

Research output: Contribution to journalArticle

Photosynthesis
photosynthesis
respiration
weather
vegetation
1 Citations

Comparative Genomics Reveals Accelerated Evolution in Conserved Pathways during the Diversification of Anole Lizards

Tollis, M. , Hutchins, E. D. , Stapley, J. , Rupp, S. M. , Eckalbar, W. L. , Maayan, I. , Lasku, E. , Infante, C. R. , Dennis, S. R. , Robertson, J. A. , May, C. M. , Crusoe, M. R. , Bermingham, E. , Denardo, D. F. , Hsieh, S. T. T. , Kulathinal, R. J. , McMillan, W. O. , Menke, D. B. , Pratt, S. C. , Rawls, J. A. & 5 others Sanjur, O., Wilson-Rawls, J., Wilson Sayres, M. A., Fisher, R. E. & Kusumi, K., Feb 1 2018, In : Genome Biology and Evolution. 10, 2, p. 489-506 18 p.

Research output: Contribution to journalArticle

Anolis
Lizards
Molecular Evolution
Genomics
lizard

Consumption explains intraspecific variation in nutrient recycling stoichiometry in a desert fish

Moody, E. K., Carson, E. W., Corman, J. R., Espinosa-Pérez, H., Ramos, J., Sabo, J. L. & Elser, J. J., Jul 1 2018, In : Ecology. 99, 7, p. 1552-1561 10 p.

Research output: Contribution to journalArticle

intraspecific variation
stoichiometry
recycling
deserts
desert
1 Citations

Coping with iron limitation: a metabolomic study of Synechocystis sp. PCC 6803

Rivas-Ubach, A., Poret-Peterson, A. T., Peñuelas, J., Sardans, J., Pérez-Trujillo, M., Legido-Quigley, C., Oravec, M., Urban, O. & Elser, J. J., Feb 1 2018, In : Acta Physiologiae Plantarum. 40, 2, 28

Research output: Contribution to journalArticle

Synechocystis sp. PCC 6803
Synechocystis
Metabolomics
metabolomics
Cyanobacteria
1 Citations

Core principles of evolutionary medicine: A Delphi study

Grunspan, D. Z., Nesse, R. M., Barnes, M. E. & Brownell, S. E., Jan 1 2018, In : Evolution, Medicine and Public Health. 2018, 1, p. 13-23 11 p.

Research output: Contribution to journalArticle

Delphi Technique
medicine
Medicine
evolutionary biology
teachers

CORL expression and function in insulin producing neurons reversibly influences adult longevity in Drosophila

Tran, N. L., Goldsmith, S. L., Dimitriadou, A., Takaesu, N. T., Consoulas, C. & Newfeld, S. J., Sep 1 2018, In : G3: Genes, Genomes, Genetics. 8, 9, p. 2979-2990 12 p.

Research output: Contribution to journalArticle

Drosophila
Insulin
Neurons
Peptides
Brain
1 Citations

CORL expression in the Drosophila central nervous system is regulated by stage specific interactions of intertwined activators and repressors

Tran, N. L., Takaesu, N. T., Cornell, E. F. & Newfeld, S. J., Jul 1 2018, In : G3: Genes, Genomes, Genetics. 8, 7, p. 2527-2536 10 p.

Research output: Contribution to journalArticle

Mushroom Bodies
Drosophila
Central Nervous System
Insulin
Activin Receptors
Virology
DNA Viruses
Austria
Single-Stranded DNA
3 Citations

Crystal Structure of Cleaved Serp-1, a Myxomavirus-Derived Immune Modulating Serpin: Structural Design of Serpin Reactive Center Loop Peptides with Improved Therapeutic Function

Mahon, B. P., Ambadapadi, S., Yaron, J. R., Lomelino, C. L., Pinard, M. A., Keinan, S., Kurnikov, I., Macaulay, C., Zhang, L., Reeves, W., McFadden, G., Tibbetts, S., McKenna, R. & Lucas, A. R., Feb 20 2018, In : Biochemistry. 57, 7, p. 1096-1107 12 p.

Research output: Contribution to journalArticle

Thallium compounds
Unsaturated polymers
Serpins
Enzyme inhibition
Mammals

Desert leaf litter decay: Coupling of microbial respiration, water-soluble fractions and photodegradation

Day, T. A., Bliss, M. S., Tomes, A. R., Ruhland, C. T. & Guénon, R., Jan 1 2018, (Accepted/In press) In : Global Change Biology.

Research output: Contribution to journalArticle

photodegradation
leaf litter
litter
respiration
desert
1 Citations

Dextrose prolotherapy for chronic shoulder pain: A case report

Seenauth, C., Inouye, V. & Langland, J. O., Jan 1 2018, In : Alternative Therapies in Health and Medicine. 24, 1, p. 56-60 5 p.

Research output: Contribution to journalArticle

Shoulder Pain
Chronic Pain
Glucose
Pain
Naturopathy

DNA Sequence Variation among Conspecific Accessions of the Legume Coursetia caribaea Reveals Geographically Localized Clades Here Ranked as Species

Lavin, M., Pennington, R. T., Hughes, C. E., Lewis, G. P., Delgado-Salinas, A., Stefano, R. D. D., Queiroz, L. P. D., Cardoso, D. & Wojciechowski, M. F., Aug 1 2018, In : Systematic Botany. 43, 3, p. 664-675 12 p.

Research output: Contribution to journalArticle

Coursetia
Crowns
Fabaceae
legumes
nucleotide sequences

Eco-evolutionary dynamics of ecological stoichiometry in plankton communities

Branco, P., Egas, M., Elser, J. J. & Huisman, J., Jul 1 2018, In : American Naturalist. 192, 1, p. E1-E20

Research output: Contribution to journalArticle

stoichiometry
plankton
phytoplankton
zooplankton
phosphorus
3 Citations

Ecosystem-Based Fisheries Management for Social–Ecological Systems: Renewing the Focus in the United States with Next Generation Fishery Ecosystem Plans

Marshall, K. N., Levin, P. S., Essington, T. E., Koehn, L. E., Anderson, L. G., Bundy, A., Carothers, C., Coleman, F., Gerber, L. R., Grabowski, J. H., Houde, E., Jensen, O. P., Möllmann, C., Rose, K., Sanchirico, J. N. & Smith, A. D. M., Jan 1 2018, In : Conservation Letters. 11, 1, e12367

Research output: Contribution to journalArticle

fishery management
fisheries management
fishery
fisheries
ecosystems

Effect of hydrogenated fat replacement with white sesame seed oil on physical, chemical and nutritional properties of cookies

Aslam, F., Iqbal, S., Nasir, M., Anjum, A. A., Swan, P. & Sweazea, K., Jan 30 2018, In : Italian Journal of Food Science. 30, 1, p. 13-25 13 p.

Research output: Contribution to journalArticle

Sesame Oil
sesame seed
sesame oil
cookies
hydrogenated oils

Effects of rainfall manipulations on carbon exchange of cyanobacteria and moss-dominated biological soil crusts

Zhang, C., Niu, D., Song, M., Elser, J. J., Okie, J. G. & Fu, H., Sep 1 2018, In : Soil Biology and Biochemistry. 124, p. 24-31 8 p.

Research output: Contribution to journalArticle

Bryophyta
soil crusts
soil crust
Cyanobacteria
moss

End-of-Life Heavy Metal Releases from Photovoltaic Panels and Quantum Dot Films: Hazardous Waste Concerns or Not?

Brown, F. C., Bi, Y., Chopra, S., Hristovski, K. D., Westerhoff, P. & Theis, T. L., Apr 15 2018, (Accepted/In press) In : ACS Sustainable Chemistry and Engineering.

Research output: Contribution to journalArticle

hazardous waste
Semiconductor quantum dots
Heavy metals
Display devices
heavy metal
1 Citations

Escherichia coli cultures maintain stable subpopulation structure during long-term evolution

Behringer, M. G., Choi, B. I., Miller, S. F., Doak, T. G., Karty, J. A., Guo, W. & Lynch, M., May 15 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 20, p. E4642-E4650

Research output: Contribution to journalArticle

Escherichia coli
Haplotypes
Population
Genes
Escherichia coli Infections

Evolution, systematics, and natural history of a new genus of cryptobiotic fungus-growing ants

Sosa-Calvo, J., Schultz, T. R., JeŠovnik, A., Dahan, R. A. & Rabeling, C., Jul 1 2018, In : Systematic Entomology. 43, 3, p. 549-567 19 p.

Research output: Contribution to journalArticle

combs (social insects)
natural history
Sericomyrmex
ant
new genus
4 Citations

Evolutionary determinants of genome-wide nucleotide composition

Long, H., Sung, W., Kucukyildirim, S., Williams, E., Miller, S. F., Guo, W., Patterson, C., Gregory, C., Strauss, C., Stone, C., Berne, C., Kysela, D., Shoemaker, W. R., Muscarella, M. E., Luo, H., Lennon, J. T., Brun, Y. V. & Lynch, M., Feb 1 2018, In : Nature Ecology and Evolution. 2, 2, p. 237-240 4 p.

Research output: Contribution to journalArticle

mutation
genomics
genome
nucleotides
gene conversion
8 Citations

Expression system for structural and functional studies of human glycosylation enzymes

Moremen, K. W. , Ramiah, A. , Stuart, M. , Steel, J. , Meng, L. , Forouhar, F. , Moniz, H. A. , Gahlay, G. , Gao, Z. , Chapla, D. , Wang, S. , Yang, J. Y. , Prabhakar, P. K. , Johnson, R. , Rosa, M. D. , Geisler, C. , Nairn, A. V. , Seetharaman, J. , Wu, S. C. , Tong, L. & 3 others Gilbert, H. J., Labaer, J. & Jarvis, D. L., Feb 1 2018, In : Nature Chemical Biology. 14, 2, p. 156-162 7 p.

Research output: Contribution to journalArticle

Glycosylation
Enzymes
Libraries
Glycomics
Sialyltransferases

From systems to biology: A computational analysis of the research articles on systems biology from 1992 to 2013

Zou, Y. & Laubichler, M. D., Jul 1 2018, In : PloS one. 13, 7, e0200929

Research output: Contribution to journalArticle

Slip forming
Systems Biology
Biological Sciences
Research
Research Personnel
1 Citations

Functional carboxy-terminal fluorescent protein fusion to pseudorabies virus small capsid protein VP26

Hogue, I. B., Jean, J., Esteves, A. D., Tanneti, N. S., Scherer, J. & Enquist, L. W., Jan 1 2018, In : Journal of Virology. 92, 1, e01193-17

Research output: Contribution to journalArticle

Luminescent Proteins
recombinant fusion proteins
Recombinant Fusion Proteins
Suid Herpesvirus 1
Cryoelectron Microscopy

Genomic malpractice: An emerging tide or gentle ripple?

Marchant, G. E. & Lindor, R. A., Jan 1 2018, In : Food and Drug Law Journal. 73, 1, p. 1-37 37 p.

Research output: Contribution to journalArticle

Malpractice
Jurisprudence
Genomics
Medicine
Health Personnel

Genomoviruses associated with mountain and western pine beetles

Kraberger, S., Hofstetter, R. W., Potter, K. A., Farkas, K. & Varsani, A., Sep 2 2018, In : Virus Research. 256, p. 17-20 4 p.

Research output: Contribution to journalArticle

Beetles
Ascomycota
Fungi
DNA Viruses
Insects
9 Citations

Geometagenomics illuminates the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale

Bernardo, P., Charles-Dominique, T., Barakat, M., Ortet, P., Fernandez, E., Filloux, D., Hartnady, P., Rebelo, T. A., Cousins, S. R., Mesleard, F., Cohez, D., Yavercovski, N., Varsani, A., Harkins, G. W., Peterschmitt, M., Malmstrom, C. M., Martin, D. P. & Roumagnac, P., Jan 1 2018, In : ISME Journal. 12, 1, p. 173-184 12 p.

Research output: Contribution to journalArticle

Plant Viruses
plant viruses
Agriculture
Ecosystem
virus

Heat exposure during outdoor activities in the US varies significantly by city, demography, and activity

Hoehne, C. G., Hondula, D. M., Chester, M. V., Eisenman, D. P., Middel, A., Fraser, A. M., Watkins, L. & Gerster, K., Nov 1 2018, In : Health and Place. 54, p. 1-10 10 p.

Research output: Contribution to journalArticle

demography
heat
Hot Temperature
Demography
exposure
1 Citations

Hidden carotenoids in the powder down of herons

Thomas, D. B. & McGraw, K. J., Jul 1 2018, In : Journal of Ornithology. 159, 3, p. 785-792 8 p.

Research output: Contribution to journalArticle

carotenoid
feather
pigment
plumage
Raman spectroscopy

High-frequency fire alters soil and plant chemistry but does not lead to nitrogen-limited growth of Eucalyptus pilularis seedlings

Butler, O. M., Rezaei Rashti, M., Lewis, T., Elser, J. J. & Chen, C., Jan 1 2018, (Accepted/In press) In : Plant and Soil.

Research output: Contribution to journalArticle

Eucalyptus pilularis
phytochemistry
plant biochemistry
soil chemistry
seedling
2 Citations
Ecosystem
China
Soil
Climate Change
Climate