Research Output 1976 2018

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Conference contribution
2017

Can upstaging of ductal carcinoma in situ be predicted at biopsy by histologic and mammographic features?

Shi, B., Grimm, L. J., Mazurowski, M. A., Marks, J. R., King, L. M., Maley, C. C., Hwang, E. S. & Lo, J. Y. 2017 Medical Imaging 2017: Computer-Aided Diagnosis. SPIE, Vol. 10134, 101342X

Research output: ResearchConference contribution

Carcinoma, Intraductal, Noninfiltrating
Biopsy
cancer
Screening
Radiologists

Development and evolution of urban infrastructure in response to historical extreme events

Markolf, S. A. & Chester, M. Jan 1 2017 International Conference on Sustainable Infrastructure 2017: Policy, Finance, and Education - Proceedings of the International Conference on Sustainable Infrastructure 2017. American Society of Civil Engineers (ASCE), p. 96-105 10 p.

Research output: ResearchConference contribution

Extreme events
Urban infrastructure
Hurricanes
Hazards
Flooding

Improving reliability of urban water systems under southwest climate change stressors

Bondank, E. N., Chester, M. V. & Ruddell, B. Jan 1 2017 International Conference on Sustainable Infrastructure 2017: Methodology - Proceedings of the International Conference on Sustainable Infrastructure 2017. American Society of Civil Engineers (ASCE), p. 419-428 10 p.

Research output: ResearchConference contribution

Stressors
Water
Climate change
System reliability
Modeling

Maintaining reliability of transportation systems and interconnected infrastructure under climate change

Markolf, S. A., Hoehne, C., Fraser, A. & Chester, M. Jan 1 2017 International Conference on Sustainable Infrastructure 2017: Methodology - Proceedings of the International Conference on Sustainable Infrastructure 2017. American Society of Civil Engineers (ASCE), p. 219-230 12 p.

Research output: ResearchConference contribution

Pathway
Climate change
Vulnerability
Planning
Climate

Neuronal network models for sensory discrimination

Samavat, M., Luli, D. & Crook, S. Mar 1 2017 Conference Record of the 50th Asilomar Conference on Signals, Systems and Computers, ACSSC 2016. IEEE Computer Society, p. 1066-1073 8 p. 7869533

Research output: ResearchConference contribution

Processing

Power system planning and operation across multiple coincident non-stationary temperature futures

Burillo, D., Chester, M. & Ruddell, B. Jan 1 2017 International Conference on Sustainable Infrastructure 2017: Methodology - Proceedings of the International Conference on Sustainable Infrastructure 2017. American Society of Civil Engineers (ASCE), p. 293-302 10 p.

Research output: ResearchConference contribution

Power system
Planning
Temperature
Air
Electricity

Prediction of occult invasive disease in ductal carcinoma in situ using computer-extracted mammographic features

Shi, B., Grimm, L. J., Mazurowski, M. A., Marks, J. R., King, L. M., Maley, C. C., Hwang, E. S. & Lo, J. Y. 2017 Medical Imaging 2017: Computer-Aided Diagnosis. SPIE, Vol. 10134, 101341I

Research output: ResearchConference contribution

cancer
predictions
Carcinoma, Intraductal, Noninfiltrating
Calcinosis
Medical Overuse

Safe-to-fail climate change adaptation strategies for phoenix roadways under extreme precipitation

Kim, Y., Eisenberg, D., Bondank, E., Chester, M., Mascaro, G. & Underwood, S. Jan 1 2017 International Conference on Sustainable Infrastructure 2017: Policy, Finance, and Education - Proceedings of the International Conference on Sustainable Infrastructure 2017. American Society of Civil Engineers (ASCE), p. 348-353 6 p.

Research output: ResearchConference contribution

Climate change
Adaptation strategies
Weather
Flooding
Risk analysis

SNaReSim: Synthetic Nanopore Read Simulator

Faucon, P. C., Balachandran, P. & Crook, S. Sep 8 2017 Proceedings - 2017 IEEE International Conference on Healthcare Informatics, ICHI 2017. Institute of Electrical and Electronics Engineers Inc., p. 338-344 7 p. 8031171

Research output: ResearchConference contribution

Nanopores
Technology
RNA Sequence Analysis
DNA Sequence Analysis

Transit planning and climate change: Reducing rider's vulnerability to heat

Fraser, A. M. & Chester, M. V. Jan 1 2017 International Conference on Sustainable Infrastructure 2017: Policy, Finance, and Education - Proceedings of the International Conference on Sustainable Infrastructure 2017. American Society of Civil Engineers (ASCE), p. 456-464 9 p.

Research output: ResearchConference contribution

Planning
Vulnerability
Climate change
Hot Temperature
Health risks
2016

An enzyme-inspired approach to stochastic allocation of robotic swarms around boundaries

Pavlic, T. P., Wilson, S., Kumar, G. P. & Berman, S. 2016 Springer Tracts in Advanced Robotics. Springer Verlag, Vol. 114, p. 631-647 17 p. (Springer Tracts in Advanced Robotics; vol. 114)

Research output: ResearchConference contribution

Robotics
Enzymes
Robots
Population dynamics

Centrifugal automation of a highly customizable rapid-elisa test towards detection of cervical cancer in point-of-care settings

Mishra, R., Alam, R., McAuley, D., Bharaj, T., Kinahan, D., Nwankire, C., Anderson, K. S. & Ducrée, J. 2016 20th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2016. Chemical and Biological Microsystems Society, p. 844-845 2 p.

Research output: ResearchConference contribution

Automation
Proteins
Biomarkers
Viruses
Routers

Characterization of a compact and highly sensitive fluorescence-based detection system for point-of-care applications

Obahiagbon, U., Kullman, D., Smith, J. T., Katchman, B. A., Arafa, H., Anderson, K. S. & Christen, J. B. Dec 27 2016 2016 IEEE Healthcare Innovation Point-of-Care Technologies Conference, HI-POCT 2016. Institute of Electrical and Electronics Engineers Inc., p. 117-120 4 p. 7797711

Research output: ResearchConference contribution

Point-of-Care Systems
Fluorescence
Equipment and Supplies
Costs and Cost Analysis
nile red

Low-cost, disposable fluorescence-based biorecognition system architecture for multiplexed point-of-care molecular diagnostics

Smith, J. T., Obahiagbon, U., Ewaisha, R., Katchman, B. A., Kaftanoglu, K., Arafa, H. M., Kullman, D. E., Anderson, K. S. & Christen, J. B. Dec 27 2016 2016 IEEE Healthcare Innovation Point-of-Care Technologies Conference, HI-POCT 2016. Institute of Electrical and Electronics Engineers Inc., p. 154-157 4 p. 7797720

Research output: ResearchConference contribution

Point-of-Care Systems
Molecular Pathology
Fluorescence
Costs and Cost Analysis
Microspheres
2 Citations

Modeling concurrency and reconfiguration in vehicular systems: A π-calculus approach

Campbell, J., Tuncali, C. E., Liu, P., Pavlic, T. P., Ozguner, U. & Fainekos, G. Nov 14 2016 2016 IEEE International Conference on Automation Science and Engineering, CASE 2016. IEEE Computer Society, Vol. 2016-November, p. 523-530 8 p. 7743450

Research output: ResearchConference contribution

Communication
Closed loop control systems
Industry
4 Citations

Non-parametric change point detection for spike trains

Mosqueiro, T., Strube-Bloss, M., Tuma, R., Pinto, R., Smith, B. H. & Huerta, R. Apr 26 2016 2016 50th Annual Conference on Information Systems and Sciences, CISS 2016. Institute of Electrical and Electronics Engineers Inc., p. 545-550 6 p. 7460561

Research output: ResearchConference contribution

Communication
Fish
Neurons
1 Citations

Utilizing S-TaLiRo as an automatic test generation framework for autonomous vehicles

Tuncali, C. E., Pavlic, T. P. & Fainekos, G. Dec 22 2016 2016 IEEE 19th International Conference on Intelligent Transportation Systems, ITSC 2016. Institute of Electrical and Electronics Engineers Inc., p. 1470-1475 6 p. 7795751

Research output: ResearchConference contribution

Cost functions
Controllers
Testing
2015
2 Citations

Anomalous subgraph detection in publication networks: Leveraging truth

Bliss, N. T., Peirson, B. R. E., Painter, D. & Laubichler, M. D. Apr 24 2015 Conference Record - Asilomar Conference on Signals, Systems and Computers. IEEE Computer Society, Vol. 2015-April, p. 2005-2009 5 p. 7094823

Research output: ResearchConference contribution

Signal processing
Innovation
2 Citations

Lipophilic-membrane based routing for centrifugal automation of heterogeneous immunoassays

Mishra, R., Alam, R., Kinahan, D. J., Anderson, K. & Ducree, J. Feb 26 2015 Proceedings of the IEEE International Conference on Micro Electro Mechanical Systems (MEMS). February ed. Institute of Electrical and Electronics Engineers Inc., Vol. 2015-February, p. 523-526 4 p. 7051007

Research output: ResearchConference contribution

immunoassay
automation
chambers
membranes
Assays

Ontology-Assisted keyword search for NeuroML models

Birgiolas, J., Dietrich, S. W., Crook, S., Rajadesingan, A., Zhang, C., Penchala, S. V. & Addepalli, V. Jun 29 2015 ACM International Conference Proceeding Series. Association for Computing Machinery, Vol. 29-June-2015, a37

Research output: ResearchConference contribution

Ontology
Semantics
Metadata
XML
Neurons
2 Citations

Provenance for explaining taxonomy alignments

Chen, M., Yu, S., Kianmajd, P., Franz, N., Bowers, S. & Ludäscher, B. 2015 Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Springer Verlag, Vol. 8628, p. 258-260 3 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8628)

Research output: ResearchConference contribution

Provenance
Taxonomy
Alignment
Taxonomies
5 Citations

ProvenanceMatrix: A visualization tool for multi-taxonomy alignments

Dang, T., Franz, N., Ludäscher, B. & Forbes, A. G. 2015 CEUR Workshop Proceedings. CEUR-WS, Vol. 1456, p. 13-24 12 p.

Research output: ResearchConference contribution

Taxonomies
Visualization
Availability

Temporal and multi-source fusion for detection of innovation in collaboration networks

Miller, B. A., Beard, M. S., Laubichler, M. D. & Bliss, N. T. Sep 14 2015 2015 18th International Conference on Information Fusion, Fusion 2015. Institute of Electrical and Electronics Engineers Inc., p. 659-665 7 p. 7266623

Research output: ResearchConference contribution

Fusion reactions
Innovation
Electric network analysis
Tensors
Signal processing
2014
4 Citations

A hybrid diagnosis approach combining black-box and white-box reasoning

Chen, M., Yu, S., Franz, N., Bowers, S. & Ludäscher, B. 2014 Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Springer Verlag, Vol. 8620 LNCS, p. 127-141 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8620 LNCS)

Research output: ResearchConference contribution

Hitting Set
Black Box
Reasoning
Model-based Diagnosis
Answer Set Programming

Floating gate ISFET for therapeutic drug screening of breast cancer cells

Shah, S., Anderson, K. S., Christen, J. B. & Hasler, J. 2014 Proceedings - IEEE International Symposium on Circuits and Systems. Institute of Electrical and Electronics Engineers Inc., p. 229-232 4 p. 6865107

Research output: ResearchConference contribution

Ion sensitive field effect transistors
Screening
Cells
Electron injection
Hot electrons
2 Citations

Integrating sustainability grand challenges and experiential learning into engineering curricula: A TUES2 collaborative research project

Antaya, C. L., Bilec, M. M., Adams, E. A., Chester, M., Parrish, K., Seager, T. P. & Landis, A. E. 2014 ASEE Annual Conference and Exposition, Conference Proceedings. American Society for Engineering Education

Research output: ResearchConference contribution

Curricula
Sustainable development
Problem-Based Learning
Education
Students

Using physical stigmergy in decentralized optimization under multiple non-separable constraints: Formal methods and an intelligent lighting example

Pavlic, T. P. Nov 27 2014 Proceedings - IEEE 28th International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2014. IEEE Computer Society, p. 402-411 10 p. 6969416

Research output: ResearchConference contribution

Formal methods
Lighting
Communication
Resource allocation
Distributed power generation
2013

Adaptive learning of immunosignaturing features for multi-disease pathologies

Malin, A., Kovvali, N., Papandreou-Suppappola, A., O'Donnell, B., Johnston, S. & Stafford, P. 2013 Conference Record - Asilomar Conference on Signals, Systems and Computers. IEEE Computer Society, p. 1301-1305 5 p. 6810504

Research output: ResearchConference contribution

Pathology
Factor analysis
Adaptive algorithms
Learning algorithms

Catalytic deoxygenation of cyanobacteria-derived fatty acids to hydrocarbons

Schulz, T., Oelschlager, M., Nielsen, D. R., Vermaas, W. & Lamb, H. H. 2013 Fuels and Petrochemicals Division 2013 - Core Programming Area at the 2013 AIChE Annual Meeting: Global Challenges for Engineering a Sustainable Future. AIChE, p. 264-265 2 p.

Research output: ResearchConference contribution

Fatty acids
Hydrocarbons
Cyanobacteria

Euler/X: A toolkit for logic-based taxonomy integration

Chen, M., Yu, S., Franz, N., Bowers, S. & Ludäscher, B. 2013 Technische Berichte des Instituts fur Informatik der Christian-Albrechts-Universitat zu Kiel. 1306 REPORT NO. ed. Instituts fur Informatik der Christian-Albrechts-Universitat zu Kiel, p. 219-224 6 p.

Research output: ResearchConference contribution

Taxonomies
2 Citations

Poster abstract: Physical stigmergy for decentralized constrained optimization: An intelligent lighting example

Pavlic, T. P. 2013 2013 ACM/IEEE International Conference on Cyber-Physical Systems, ICCPS 2013. p. 258 1 p. 6604036

Research output: ResearchConference contribution

Constrained optimization
Lighting
3 Citations

Poster abstract: Physical stigmergy for decentralized constrained optimization: An intelligent lighting example

Pavlic, T. P. 2013 Proceedings of the ACM/IEEE 4th International Conference on Cyber-Physical Systems, ICCPS 2013. p. 258 1 p.

Research output: ResearchConference contribution

Constrained optimization
Lighting
Resource allocation
Actuators
Data storage equipment
2012
7 Citations

A stochastic hybrid system model of collective transport in the desert ant aphaenogaster cockerelli

Kumar, G. P., Buffin, A., Pavlic, T. P., Pratt, S. C. & Berman, S. M. 2012 HSCC 2013 - Proceedings of the 16th International Conference on Hybrid Systems: Computation and Control, Part of CPSWeek 2013. Vol. 1, p. 119-124 6 p.

Research output: ResearchConference contribution

Hybrid systems
Time series
Video recording
Switches
Robots
1 Citations

Beta process based adaptive learning for immunosignature microarray feature identification

Malin, A., Kovvali, N., Papandreou-Suppappola, A., Zhang, J. J., Johnston, S. & Stafford, P. 2012 Conference Record - Asilomar Conference on Signals, Systems and Computers. p. 1651-1655 5 p. 6489312

Research output: ResearchConference contribution

Microarrays
Identification (control systems)
Factor analysis
Peptides
2011
2 Citations

Adaptive learning of immunosignaturing peptide array features for biothreat detection and classification

Malin, A., Zhang, J. J., Chakraborty, B., Kovvali, N., Papandreou-Suppappola, A., Johnston, S. & Stafford, P. 2011 Conference Record - Asilomar Conference on Signals, Systems and Computers. p. 1883-1887 5 p. 6190350

Research output: ResearchConference contribution

Microarrays
Peptides
Stochastic models
Antibodies
Blood

Exploring the interplay of multiple greenhouse gas emissions drivers at the city level

Romero-Lankao, P., Tribbia, J., Carney, S., Gurney, K. & Dhakal, S. 2011 ACS National Meeting Book of Abstracts.

Research output: ResearchConference contribution

Gas emissions
Greenhouse gases
Greenhouses
Carbon Monoxide
Environmental impact
1 Citations

Global night-time lights for observing human activity

Hipskind, S., Elvidge, C., Gurney, K., Imhoff, M., Bounoua, L., Sheffner, E., Nemani, R., Pettit, D. & Fischer, M. 2011 34th International Symposium on Remote Sensing of Environment - The GEOSS Era: Towards Operational Environmental Monitoring.

Research output: ResearchConference contribution

Fossil fuels
Carbon
Earth (planet)
Earth sciences
Spatial distribution

High spatiotemporal resolution urban fossil fuel CO 2 emissions mapping and modeling: A pilot study in Indianapolis, Indiana, USA

Gurney, K. R., Razlivanov, I., Song, Y. & Zhou, Y. 2011 ACS National Meeting Book of Abstracts.

Research output: ResearchConference contribution

Fossil fuels
Geographic information systems
Remote sensing
Carbon
Carbon Monoxide
2 Citations

Indianapolis flux experiment (INFLUX): Experiment design and new results regarding measurements of urban-area CO 2 and CH 4 emission fluxes

Shepson, P. B., Cambaliza, M., Davis, K., Gurney, K., Lauvaux, T., Richardson, N., Richardson, S., Sweeney, C. & Turnbull, J. 2011 ACS National Meeting Book of Abstracts.

Research output: ResearchConference contribution

Carbon Monoxide
Fluxes
Experiments
Greenhouse gases
Towers

Linear objects impact on grassland degradation in the typical steppe region of China

Li, S., Verburg, P. H., Lv, S., Gao, S. & Wu, J. 2011 International Geoscience and Remote Sensing Symposium (IGARSS). p. 672-675 4 p. 6049219

Research output: ResearchConference contribution

steppe
grassland
Degradation
road
accessibility
1 Citations

Study of group food retrieval by ants as a model for multi-robot collective transport strategies

Berman, S., Lindsey, Q., Sakar, M. S., Kumar, V. & Pratt, S. 2011 Robotics: Science and Systems. MIT Press Journals, Vol. 6, p. 259-266 8 p.

Research output: ResearchConference contribution

Robots
Hybrid systems
Cameras
Stiffness
Experiments

Valuing the resilience of the electrical power infrastructure

Perrings, C., Larson, E. K. & Maliszewski, P. J. 2011 2011 IEEE/PES Power Systems Conference and Exposition, PSCE 2011. 5772485

Research output: ResearchConference contribution

Outages
Compensation and Redress
1 Citations

Vulcan and Hestia: High resolution quantification of fossil fuel CO 2 emissions

Gurney, K. R., Zhou, Y., Mendoza, D., Chandrasekaran, V., Geethakumar, S., Razlivanov, I., Song, Y. & Godbole, A. 2011 MODSIM 2011 - 19th International Congress on Modelling and Simulation - Sustaining Our Future: Understanding and Living with Uncertainty. p. 1781-1787 7 p.

Research output: ResearchConference contribution

Quantification
High Resolution
Fossil fuels
Monitoring
Planning
2010
6 Citations

An integrative approach to identifying biologically relevant genes

Zhao, Z., Wang, J., Sharma, S., Agarwal, N., Liu, H. & Chang, Y. 2010 Proceedings of the 10th SIAM International Conference on Data Mining, SDM 2010. p. 838-849 12 p.

Research output: ResearchConference contribution

Genes
Microarrays
Ontology
Statistical Models
1 Citations

Biological relevance detection via network dynamic analysis

Zhao, Z., Liu, H., Wang, J. & Chang, Y. 2010 2nd International Conference on Bioinformatics and Computational Biology 2010, BICoB 2010. p. 44-49 6 p.

Research output: ResearchConference contribution

Dynamic analysis
Genes
Gene expression
Statistical Models
Transcriptome

Infrastructure ecology for sustainable and resilient urban infrastructure design

Jeong, H., Pandit, A., Crittenden, J. C., Xu, M., Perrings, C., Wang, D., Williams, E., Karady, G., Li, K., Brown, M., Begovic, M., Ariaratnam, S. & French, S. 2010 AIChE Annual Meeting, Conference Proceedings.

Research output: ResearchConference contribution

Ecology
2 Citations

My-Plant.org: A phylogenetically structured social network

Hanlon, M. R., Mock, S., Nuthulapati, P., Gonzales, M. B., Soltis, P., Soltis, D., Majure, L. C., Payton, A., Mishler, B., Tremblay, S., Madsen, T., Olmstead, R., McCourt, R., Wojciechowski, M. & Merchant, N. 2010 2010 Gateway Computing Environments Workshop, GCE 2010. 5676118

Research output: ResearchConference contribution

Electric sparks
Students
Communication
2 Citations

Photonic approach to the selective inactivation of viruses with a near-infrared ultrashort pulsed laser

Tsen, K. T., Tsen, S. W. D., Fu, Q., Lindsay, S. M., Kibler, K., Jacobs, B., Wu, T. C., Li, Z., Yan, H., Cope, S., Vaiana, S. & Kiang, J. G. 2010 Progress in Biomedical Optics and Imaging - Proceedings of SPIE. Vol. 7561, 75610W

Research output: ResearchConference contribution

Optics and Photonics
Virus Inactivation
Lasers
ultrashort pulsed lasers
viruses
2009
1 Citations

cGMP processing of a plant-produced human vaccine candidate for sexually transmitted infections

Chen, Q., Morris, G. & Lai, H. 2009 American Society of Agricultural and Biological Engineers Annual International Meeting 2009, ASABE 2009. Vol. 1, p. 468-473 6 p.

Research output: ResearchConference contribution

sexually transmitted diseases
good manufacturing practices
vaccines
Sexually Transmitted Diseases
Vaccines
25 Citations

Drosophila gene expression pattern annotation through multi-instance multi-label learning

Li, Y. X., Ji, S., Kumar, S., Ye, J. & Zhou, Z. H. 2009 IJCAI International Joint Conference on Artificial Intelligence. p. 1445-1450 6 p.

Research output: ResearchConference contribution

Gene expression
Labels
Computational methods
Support vector machines
Learning systems